Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26481 | 3' | -59.8 | NC_005357.1 | + | 27759 | 1.08 | 0.000255 |
Target: 5'- aGCGCUCAACACCCGCACCCAGGCCAAg -3' miRNA: 3'- -CGCGAGUUGUGGGCGUGGGUCCGGUU- -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 12449 | 0.79 | 0.043759 |
Target: 5'- cCGUUCGACGgCUGCAUCCAGGCCGu -3' miRNA: 3'- cGCGAGUUGUgGGCGUGGGUCCGGUu -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 35808 | 0.77 | 0.065865 |
Target: 5'- cGCGCgCAGCGCCaCGCGCCCGcuGGUCAu -3' miRNA: 3'- -CGCGaGUUGUGG-GCGUGGGU--CCGGUu -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 34288 | 0.76 | 0.067804 |
Target: 5'- aGCGC-CGACACCCGCacGCCCAcaaccaacgccGGCCGc -3' miRNA: 3'- -CGCGaGUUGUGGGCG--UGGGU-----------CCGGUu -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 29433 | 0.76 | 0.076123 |
Target: 5'- cGCGCUC-GCACgUCGCGCCCAGGUg-- -3' miRNA: 3'- -CGCGAGuUGUG-GGCGUGGGUCCGguu -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 27421 | 0.74 | 0.095779 |
Target: 5'- cGCGCcUGGCGCaCCGCGCCCGgcGGCCGc -3' miRNA: 3'- -CGCGaGUUGUG-GGCGUGGGU--CCGGUu -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 15744 | 0.74 | 0.110412 |
Target: 5'- uGCGCUCGACAUaCCGCACCUcguugccGCCAAu -3' miRNA: 3'- -CGCGAGUUGUG-GGCGUGGGuc-----CGGUU- -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 8545 | 0.73 | 0.128552 |
Target: 5'- aCGCUCGACAgCCGCGCCgauggcgggcagcgaCAGGCgCGAc -3' miRNA: 3'- cGCGAGUUGUgGGCGUGG---------------GUCCG-GUU- -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 13280 | 0.73 | 0.13073 |
Target: 5'- gGCGUcuuUCAGCGCCgauugcagCGCGCCgGGGCCGg -3' miRNA: 3'- -CGCG---AGUUGUGG--------GCGUGGgUCCGGUu -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 29698 | 0.73 | 0.13073 |
Target: 5'- gGCGCg--GCACCCaGCACCaaCGGGCCGGg -3' miRNA: 3'- -CGCGaguUGUGGG-CGUGG--GUCCGGUU- -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 33542 | 0.72 | 0.139786 |
Target: 5'- aGCGCcauUCAcaaugAUGCCCGCGCCCgcuucguggcgaccgAGGCCAAc -3' miRNA: 3'- -CGCG---AGU-----UGUGGGCGUGGG---------------UCCGGUU- -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 29562 | 0.72 | 0.147768 |
Target: 5'- cGUGCUCGGgguaucgcgucagguCGgCCGCGCCCAGGCg-- -3' miRNA: 3'- -CGCGAGUU---------------GUgGGCGUGGGUCCGguu -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 23743 | 0.72 | 0.15445 |
Target: 5'- gGCGCgcagCAGCGCCaugccgGCGCcaCCGGGCCGAu -3' miRNA: 3'- -CGCGa---GUUGUGGg-----CGUG--GGUCCGGUU- -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 32533 | 0.72 | 0.15445 |
Target: 5'- uGCaGCUCGACaucGCCaCGCGCCU-GGCCGAg -3' miRNA: 3'- -CG-CGAGUUG---UGG-GCGUGGGuCCGGUU- -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 3714 | 0.71 | 0.158765 |
Target: 5'- cGCGCUCGugGCGCCCGUGCCguuCAcGCCGGu -3' miRNA: 3'- -CGCGAGU--UGUGGGCGUGG---GUcCGGUU- -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 12970 | 0.71 | 0.158765 |
Target: 5'- cGCGCUCGuCGCCUggugccaggaGCACCUGGGCgCGAc -3' miRNA: 3'- -CGCGAGUuGUGGG----------CGUGGGUCCG-GUU- -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 28969 | 0.71 | 0.172368 |
Target: 5'- aUGCcCGACA-CCGCGCCCgAGGCCGc -3' miRNA: 3'- cGCGaGUUGUgGGCGUGGG-UCCGGUu -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 18987 | 0.71 | 0.177128 |
Target: 5'- cGCGCgaacCAUCCGCAUCCcGGCCGg -3' miRNA: 3'- -CGCGaguuGUGGGCGUGGGuCCGGUu -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 42029 | 0.71 | 0.177128 |
Target: 5'- uGCuGCUCAACAgUCGCGCgCuGGCCGc -3' miRNA: 3'- -CG-CGAGUUGUgGGCGUGgGuCCGGUu -5' |
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26481 | 3' | -59.8 | NC_005357.1 | + | 6661 | 0.7 | 0.184988 |
Target: 5'- cGCGCUCAugGUCUGCGCCacgccgauguucaGGGCCGu -3' miRNA: 3'- -CGCGAGUugUGGGCGUGGg------------UCCGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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