miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26481 3' -59.8 NC_005357.1 + 186 0.68 0.270391
Target:  5'- uCGCUgGGCACCgucaCGCugCCGGGCg-- -3'
miRNA:   3'- cGCGAgUUGUGG----GCGugGGUCCGguu -5'
26481 3' -59.8 NC_005357.1 + 788 0.68 0.25752
Target:  5'- aGCGUauuucagguuuccggCGACGCgCCGCGCCCAGcccuuGCCGAa -3'
miRNA:   3'- -CGCGa--------------GUUGUG-GGCGUGGGUC-----CGGUU- -5'
26481 3' -59.8 NC_005357.1 + 997 0.66 0.355109
Target:  5'- uCGCcCGcUGCCCGCGCCaCuGGCCGGg -3'
miRNA:   3'- cGCGaGUuGUGGGCGUGG-GuCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 1294 0.67 0.299171
Target:  5'- cCGC-CcACACcgCCGCGCCCAGGgCGAc -3'
miRNA:   3'- cGCGaGuUGUG--GGCGUGGGUCCgGUU- -5'
26481 3' -59.8 NC_005357.1 + 1754 0.68 0.27737
Target:  5'- gGCGgUCAugGCcgGCCUGCGCCUggcgcgucGGGCCGAu -3'
miRNA:   3'- -CGCgAGU--UG--UGGGCGUGGG--------UCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 2842 0.68 0.29176
Target:  5'- cGCGCagCGGCGCCaGCACCagcgagGGGCCu- -3'
miRNA:   3'- -CGCGa-GUUGUGGgCGUGGg-----UCCGGuu -5'
26481 3' -59.8 NC_005357.1 + 3714 0.71 0.158765
Target:  5'- cGCGCUCGugGCGCCCGUGCCguuCAcGCCGGu -3'
miRNA:   3'- -CGCGAGU--UGUGGGCGUGG---GUcCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 4775 0.68 0.270391
Target:  5'- gGCGUUCGccCACaCUGCGCCCAGcacGCCGg -3'
miRNA:   3'- -CGCGAGUu-GUG-GGCGUGGGUC---CGGUu -5'
26481 3' -59.8 NC_005357.1 + 5353 0.67 0.338402
Target:  5'- cGCGCUgCGugGCcgccugcaCCGCGCCCAGGg--- -3'
miRNA:   3'- -CGCGA-GUugUG--------GGCGUGGGUCCgguu -5'
26481 3' -59.8 NC_005357.1 + 6332 0.69 0.2503
Target:  5'- cGCGUUCcgccccagccaaAGCGCCCG-GCCCgaAGGCCGGg -3'
miRNA:   3'- -CGCGAG------------UUGUGGGCgUGGG--UCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 6661 0.7 0.184988
Target:  5'- cGCGCUCAugGUCUGCGCCacgccgauguucaGGGCCGu -3'
miRNA:   3'- -CGCGAGUugUGGGCGUGGg------------UCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 7149 0.7 0.192117
Target:  5'- gGCGCUCAugACgUugaaGCCCAGGCCc- -3'
miRNA:   3'- -CGCGAGUugUGgGcg--UGGGUCCGGuu -5'
26481 3' -59.8 NC_005357.1 + 7928 0.69 0.243882
Target:  5'- uGCGCUCGGCguccACCUuCACgCCAcGGCCAu -3'
miRNA:   3'- -CGCGAGUUG----UGGGcGUG-GGU-CCGGUu -5'
26481 3' -59.8 NC_005357.1 + 8055 0.7 0.197355
Target:  5'- cCGUcCAugACgCGCGCCCAGGUCGc -3'
miRNA:   3'- cGCGaGUugUGgGCGUGGGUCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 8104 0.7 0.202718
Target:  5'- aGCGUUUGAgGCCCuGCACCgCGcGGCCGg -3'
miRNA:   3'- -CGCGAGUUgUGGG-CGUGG-GU-CCGGUu -5'
26481 3' -59.8 NC_005357.1 + 8545 0.73 0.128552
Target:  5'- aCGCUCGACAgCCGCGCCgauggcgggcagcgaCAGGCgCGAc -3'
miRNA:   3'- cGCGAGUUGUgGGCGUGG---------------GUCCG-GUU- -5'
26481 3' -59.8 NC_005357.1 + 10760 0.7 0.197355
Target:  5'- cGCGCUCGACuucgGCCCGCAguUCUucGGCCu- -3'
miRNA:   3'- -CGCGAGUUG----UGGGCGU--GGGu-CCGGuu -5'
26481 3' -59.8 NC_005357.1 + 11018 0.69 0.225446
Target:  5'- gGCGUcgaUgAACACCUGCuGCaCCGGGCCGu -3'
miRNA:   3'- -CGCG---AgUUGUGGGCG-UG-GGUCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 11909 0.67 0.337582
Target:  5'- uGCGCUgaccaGAUACuucaccgCCGUGCCCAGGCUGGa -3'
miRNA:   3'- -CGCGAg----UUGUG-------GGCGUGGGUCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 12270 0.66 0.346683
Target:  5'- gGCGC-CAACugCCGCugauguCCgacgcggugCAGGCCGg -3'
miRNA:   3'- -CGCGaGUUGugGGCGu-----GG---------GUCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.