miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26483 3' -50.3 NC_005357.1 + 27372 1.13 0.001268
Target:  5'- uCAGUCGAACAUUGCCCGCAUCAACGCg -3'
miRNA:   3'- -GUCAGCUUGUAACGGGCGUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 10852 0.75 0.409474
Target:  5'- uGGUCGAGCAg-GCCCuGCguggcuucgGUCGGCGCg -3'
miRNA:   3'- gUCAGCUUGUaaCGGG-CG---------UAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 6539 0.73 0.503313
Target:  5'- gGGUCGu-CGUcGCCCgaaucgccagGCGUCAGCGCa -3'
miRNA:   3'- gUCAGCuuGUAaCGGG----------CGUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 15034 0.73 0.514335
Target:  5'- -cGUUGGuguugGCGaUGCCCGCGUUGAUGCg -3'
miRNA:   3'- guCAGCU-----UGUaACGGGCGUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 33865 0.72 0.559316
Target:  5'- -uGUCGcGCcugucgcUGCCCGcCAUCGGCGCg -3'
miRNA:   3'- guCAGCuUGua-----ACGGGC-GUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 9192 0.71 0.628528
Target:  5'- -cGUCG-ACGUUgGCCUGCucggCGGCGCg -3'
miRNA:   3'- guCAGCuUGUAA-CGGGCGua--GUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 17752 0.7 0.674875
Target:  5'- uGGgcgUGGACGUgGCCCGCGgcgGGCGCg -3'
miRNA:   3'- gUCa--GCUUGUAaCGGGCGUag-UUGCG- -5'
26483 3' -50.3 NC_005357.1 + 21101 0.7 0.686381
Target:  5'- -cGUCGGugAgcgcguuuugcUUGCUgGUAUCGACGCu -3'
miRNA:   3'- guCAGCUugU-----------AACGGgCGUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 8666 0.7 0.697829
Target:  5'- gCGGUCG-GCAUUGCgUGCcgC-GCGCa -3'
miRNA:   3'- -GUCAGCuUGUAACGgGCGuaGuUGCG- -5'
26483 3' -50.3 NC_005357.1 + 5007 0.7 0.697829
Target:  5'- aGGUCGGcGCA--GUCCGCuuUCAGCGCc -3'
miRNA:   3'- gUCAGCU-UGUaaCGGGCGu-AGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 4253 0.7 0.709205
Target:  5'- gUAGUCGG----UGCCgGcCGUCAGCGCc -3'
miRNA:   3'- -GUCAGCUuguaACGGgC-GUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 34382 0.7 0.709205
Target:  5'- uGGUCGAGCAgcgGUUgaGCGUCGAgGCu -3'
miRNA:   3'- gUCAGCUUGUaa-CGGg-CGUAGUUgCG- -5'
26483 3' -50.3 NC_005357.1 + 24785 0.69 0.731693
Target:  5'- gGGUCGuccuCGaUGCCCGCGUUGAaguCGCc -3'
miRNA:   3'- gUCAGCuu--GUaACGGGCGUAGUU---GCG- -5'
26483 3' -50.3 NC_005357.1 + 5819 0.69 0.753737
Target:  5'- aUAGUCGGGCAUgGCgUGCcgCAGCa- -3'
miRNA:   3'- -GUCAGCUUGUAaCGgGCGuaGUUGcg -5'
26483 3' -50.3 NC_005357.1 + 2818 0.69 0.753737
Target:  5'- -cGUCGGGCcaggUGCUCGCggCcACGCg -3'
miRNA:   3'- guCAGCUUGua--ACGGGCGuaGuUGCG- -5'
26483 3' -50.3 NC_005357.1 + 21259 0.69 0.764558
Target:  5'- gGGUCGA----UGCCCaGCAugUCGGCGUa -3'
miRNA:   3'- gUCAGCUuguaACGGG-CGU--AGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 31682 0.68 0.779451
Target:  5'- aAGUCGAGCGc-GCCCuuggcgagcagcaagGCGaCGACGCa -3'
miRNA:   3'- gUCAGCUUGUaaCGGG---------------CGUaGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 30707 0.68 0.784691
Target:  5'- uGG-CGGGCAUgGCUuucuccaucggaaUGCGUCAACGCa -3'
miRNA:   3'- gUCaGCUUGUAaCGG-------------GCGUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 27028 0.68 0.785734
Target:  5'- uCGGUCGuccgGCAUcuucgccgGCCCGCAcgCgGACGCg -3'
miRNA:   3'- -GUCAGCu---UGUAa-------CGGGCGUa-G-UUGCG- -5'
26483 3' -50.3 NC_005357.1 + 11075 0.68 0.785734
Target:  5'- --cUCGAACG-UGUCCGgGUCGcGCGCg -3'
miRNA:   3'- gucAGCUUGUaACGGGCgUAGU-UGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.