Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 32701 | 0.68 | 0.785734 |
Target: 5'- ---aCGAGCAguucGCCCGCGgcuUCGAgGCg -3' miRNA: 3'- gucaGCUUGUaa--CGGGCGU---AGUUgCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 3269 | 0.68 | 0.796061 |
Target: 5'- ----gGAACAUUuCCCGCG-CAACGCc -3' miRNA: 3'- gucagCUUGUAAcGGGCGUaGUUGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 26699 | 0.68 | 0.806199 |
Target: 5'- -uGUCGAGCGcaugGCCuCGCGccaguUCGAUGCc -3' miRNA: 3'- guCAGCUUGUaa--CGG-GCGU-----AGUUGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 15986 | 0.68 | 0.806199 |
Target: 5'- -uGUCGAACAggUGCgCCGC----GCGCa -3' miRNA: 3'- guCAGCUUGUa-ACG-GGCGuaguUGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 18911 | 0.68 | 0.816133 |
Target: 5'- aGGUCGAugAggucggcGCCCGCGcUGGCGUu -3' miRNA: 3'- gUCAGCUugUaa-----CGGGCGUaGUUGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 22052 | 0.68 | 0.816133 |
Target: 5'- gCGGUCGucGCGcUUGCUCGgGUCGcggucgGCGCg -3' miRNA: 3'- -GUCAGCu-UGU-AACGGGCgUAGU------UGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 35048 | 0.68 | 0.816133 |
Target: 5'- aGGUCGccGCggUGCCCGCcgCuggacgaacGACGCc -3' miRNA: 3'- gUCAGCu-UGuaACGGGCGuaG---------UUGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 38711 | 0.67 | 0.82489 |
Target: 5'- ---gCGAGCAUgagcggaUGCgCCGCAUggggCAGCGCg -3' miRNA: 3'- gucaGCUUGUA-------ACG-GGCGUA----GUUGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 4844 | 0.67 | 0.834406 |
Target: 5'- gUAGUCGAugAccauaggUUGCCCG-GUCAggucguugcccaGCGCg -3' miRNA: 3'- -GUCAGCUugU-------AACGGGCgUAGU------------UGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 8493 | 0.67 | 0.835344 |
Target: 5'- uGGUCG-GCAUaGUCCaCGUCGAUGCc -3' miRNA: 3'- gUCAGCuUGUAaCGGGcGUAGUUGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 18744 | 0.67 | 0.843684 |
Target: 5'- -cGUCGAACGcgaccaccuuuUUGCCgGCgauuucuuccaucGUCAGCGUc -3' miRNA: 3'- guCAGCUUGU-----------AACGGgCG-------------UAGUUGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 39333 | 0.67 | 0.844599 |
Target: 5'- --uUCGGugGUUGCCgCGUGUCGAaggGCa -3' miRNA: 3'- gucAGCUugUAACGG-GCGUAGUUg--CG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 2272 | 0.67 | 0.844599 |
Target: 5'- -uGUCGAucaucgcguACAgUGCCgCGCgGUCGAUGCu -3' miRNA: 3'- guCAGCU---------UGUaACGG-GCG-UAGUUGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 20275 | 0.67 | 0.848232 |
Target: 5'- -uGUUGGccguCGUUGCCCGCAccaguagcggguugcUCGGCGg -3' miRNA: 3'- guCAGCUu---GUAACGGGCGU---------------AGUUGCg -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 20472 | 0.67 | 0.853605 |
Target: 5'- uCGGUCGuuccgcGCAcugUGCCCGCguugggccuugGUCGGCGg -3' miRNA: 3'- -GUCAGCu-----UGUa--ACGGGCG-----------UAGUUGCg -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 32831 | 0.67 | 0.853605 |
Target: 5'- -cGUCGAACucacGCCCGaggugcgCAACGUg -3' miRNA: 3'- guCAGCUUGuaa-CGGGCgua----GUUGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 42038 | 0.67 | 0.862353 |
Target: 5'- aCAGUCGcGCGcUGgCCGCGcUCAAUcgGCa -3' miRNA: 3'- -GUCAGCuUGUaACgGGCGU-AGUUG--CG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 33885 | 0.66 | 0.870833 |
Target: 5'- aGGUCGAGCGcgGCCUGCGaUAccuGgGCa -3' miRNA: 3'- gUCAGCUUGUaaCGGGCGUaGU---UgCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 8830 | 0.66 | 0.870833 |
Target: 5'- gGGUCGGGCca-GCCgcaaCGCGggcCAGCGCg -3' miRNA: 3'- gUCAGCUUGuaaCGG----GCGUa--GUUGCG- -5' |
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26483 | 3' | -50.3 | NC_005357.1 | + | 21202 | 0.66 | 0.879038 |
Target: 5'- uGGUCuGcGCGUUGCuuGCGgauaAGCGCc -3' miRNA: 3'- gUCAG-CuUGUAACGggCGUag--UUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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