miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26483 3' -50.3 NC_005357.1 + 39333 0.67 0.844599
Target:  5'- --uUCGGugGUUGCCgCGUGUCGAaggGCa -3'
miRNA:   3'- gucAGCUugUAACGG-GCGUAGUUg--CG- -5'
26483 3' -50.3 NC_005357.1 + 18744 0.67 0.843684
Target:  5'- -cGUCGAACGcgaccaccuuuUUGCCgGCgauuucuuccaucGUCAGCGUc -3'
miRNA:   3'- guCAGCUUGU-----------AACGGgCG-------------UAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 8493 0.67 0.835344
Target:  5'- uGGUCG-GCAUaGUCCaCGUCGAUGCc -3'
miRNA:   3'- gUCAGCuUGUAaCGGGcGUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 4844 0.67 0.834406
Target:  5'- gUAGUCGAugAccauaggUUGCCCG-GUCAggucguugcccaGCGCg -3'
miRNA:   3'- -GUCAGCUugU-------AACGGGCgUAGU------------UGCG- -5'
26483 3' -50.3 NC_005357.1 + 38711 0.67 0.82489
Target:  5'- ---gCGAGCAUgagcggaUGCgCCGCAUggggCAGCGCg -3'
miRNA:   3'- gucaGCUUGUA-------ACG-GGCGUA----GUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 18911 0.68 0.816133
Target:  5'- aGGUCGAugAggucggcGCCCGCGcUGGCGUu -3'
miRNA:   3'- gUCAGCUugUaa-----CGGGCGUaGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 35048 0.68 0.816133
Target:  5'- aGGUCGccGCggUGCCCGCcgCuggacgaacGACGCc -3'
miRNA:   3'- gUCAGCu-UGuaACGGGCGuaG---------UUGCG- -5'
26483 3' -50.3 NC_005357.1 + 22052 0.68 0.816133
Target:  5'- gCGGUCGucGCGcUUGCUCGgGUCGcggucgGCGCg -3'
miRNA:   3'- -GUCAGCu-UGU-AACGGGCgUAGU------UGCG- -5'
26483 3' -50.3 NC_005357.1 + 15986 0.68 0.806199
Target:  5'- -uGUCGAACAggUGCgCCGC----GCGCa -3'
miRNA:   3'- guCAGCUUGUa-ACG-GGCGuaguUGCG- -5'
26483 3' -50.3 NC_005357.1 + 26699 0.68 0.806199
Target:  5'- -uGUCGAGCGcaugGCCuCGCGccaguUCGAUGCc -3'
miRNA:   3'- guCAGCUUGUaa--CGG-GCGU-----AGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 3269 0.68 0.796061
Target:  5'- ----gGAACAUUuCCCGCG-CAACGCc -3'
miRNA:   3'- gucagCUUGUAAcGGGCGUaGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 27028 0.68 0.785734
Target:  5'- uCGGUCGuccgGCAUcuucgccgGCCCGCAcgCgGACGCg -3'
miRNA:   3'- -GUCAGCu---UGUAa-------CGGGCGUa-G-UUGCG- -5'
26483 3' -50.3 NC_005357.1 + 32701 0.68 0.785734
Target:  5'- ---aCGAGCAguucGCCCGCGgcuUCGAgGCg -3'
miRNA:   3'- gucaGCUUGUaa--CGGGCGU---AGUUgCG- -5'
26483 3' -50.3 NC_005357.1 + 11075 0.68 0.785734
Target:  5'- --cUCGAACG-UGUCCGgGUCGcGCGCg -3'
miRNA:   3'- gucAGCUUGUaACGGGCgUAGU-UGCG- -5'
26483 3' -50.3 NC_005357.1 + 30707 0.68 0.784691
Target:  5'- uGG-CGGGCAUgGCUuucuccaucggaaUGCGUCAACGCa -3'
miRNA:   3'- gUCaGCUUGUAaCGG-------------GCGUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 31682 0.68 0.779451
Target:  5'- aAGUCGAGCGc-GCCCuuggcgagcagcaagGCGaCGACGCa -3'
miRNA:   3'- gUCAGCUUGUaaCGGG---------------CGUaGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 21259 0.69 0.764558
Target:  5'- gGGUCGA----UGCCCaGCAugUCGGCGUa -3'
miRNA:   3'- gUCAGCUuguaACGGG-CGU--AGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 2818 0.69 0.753737
Target:  5'- -cGUCGGGCcaggUGCUCGCggCcACGCg -3'
miRNA:   3'- guCAGCUUGua--ACGGGCGuaGuUGCG- -5'
26483 3' -50.3 NC_005357.1 + 5819 0.69 0.753737
Target:  5'- aUAGUCGGGCAUgGCgUGCcgCAGCa- -3'
miRNA:   3'- -GUCAGCUUGUAaCGgGCGuaGUUGcg -5'
26483 3' -50.3 NC_005357.1 + 24785 0.69 0.731693
Target:  5'- gGGUCGuccuCGaUGCCCGCGUUGAaguCGCc -3'
miRNA:   3'- gUCAGCuu--GUaACGGGCGUAGUU---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.