Results 21 - 40 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 12430 | 0.66 | 0.90193 |
Target: 5'- gCAGUUgGAGCAcgaugGCCCGU-UCGACGg -3' miRNA: 3'- -GUCAG-CUUGUaa---CGGGCGuAGUUGCg -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 15034 | 0.73 | 0.514335 |
Target: 5'- -cGUUGGuguugGCGaUGCCCGCGUUGAUGCg -3' miRNA: 3'- guCAGCU-----UGUaACGGGCGUAGUUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 15986 | 0.68 | 0.806199 |
Target: 5'- -uGUCGAACAggUGCgCCGC----GCGCa -3' miRNA: 3'- guCAGCUUGUa-ACG-GGCGuaguUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 17434 | 0.66 | 0.908968 |
Target: 5'- --cUUGAGCAgugGCCCcgccaGCAUCGAgGCc -3' miRNA: 3'- gucAGCUUGUaa-CGGG-----CGUAGUUgCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 17752 | 0.7 | 0.674875 |
Target: 5'- uGGgcgUGGACGUgGCCCGCGgcgGGCGCg -3' miRNA: 3'- gUCa--GCUUGUAaCGGGCGUag-UUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 18744 | 0.67 | 0.843684 |
Target: 5'- -cGUCGAACGcgaccaccuuuUUGCCgGCgauuucuuccaucGUCAGCGUc -3' miRNA: 3'- guCAGCUUGU-----------AACGGgCG-------------UAGUUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 18911 | 0.68 | 0.816133 |
Target: 5'- aGGUCGAugAggucggcGCCCGCGcUGGCGUu -3' miRNA: 3'- gUCAGCUugUaa-----CGGGCGUaGUUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 20275 | 0.67 | 0.848232 |
Target: 5'- -uGUUGGccguCGUUGCCCGCAccaguagcggguugcUCGGCGg -3' miRNA: 3'- guCAGCUu---GUAACGGGCGU---------------AGUUGCg -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 20472 | 0.67 | 0.853605 |
Target: 5'- uCGGUCGuuccgcGCAcugUGCCCGCguugggccuugGUCGGCGg -3' miRNA: 3'- -GUCAGCu-----UGUa--ACGGGCG-----------UAGUUGCg -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 21101 | 0.7 | 0.686381 |
Target: 5'- -cGUCGGugAgcgcguuuugcUUGCUgGUAUCGACGCu -3' miRNA: 3'- guCAGCUugU-----------AACGGgCGUAGUUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 21202 | 0.66 | 0.879038 |
Target: 5'- uGGUCuGcGCGUUGCuuGCGgauaAGCGCc -3' miRNA: 3'- gUCAG-CuUGUAACGggCGUag--UUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 21259 | 0.69 | 0.764558 |
Target: 5'- gGGUCGA----UGCCCaGCAugUCGGCGUa -3' miRNA: 3'- gUCAGCUuguaACGGG-CGU--AGUUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 22052 | 0.68 | 0.816133 |
Target: 5'- gCGGUCGucGCGcUUGCUCGgGUCGcggucgGCGCg -3' miRNA: 3'- -GUCAGCu-UGU-AACGGGCgUAGU------UGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 24785 | 0.69 | 0.731693 |
Target: 5'- gGGUCGuccuCGaUGCCCGCGUUGAaguCGCc -3' miRNA: 3'- gUCAGCuu--GUaACGGGCGUAGUU---GCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 26699 | 0.68 | 0.806199 |
Target: 5'- -uGUCGAGCGcaugGCCuCGCGccaguUCGAUGCc -3' miRNA: 3'- guCAGCUUGUaa--CGG-GCGU-----AGUUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 27028 | 0.68 | 0.785734 |
Target: 5'- uCGGUCGuccgGCAUcuucgccgGCCCGCAcgCgGACGCg -3' miRNA: 3'- -GUCAGCu---UGUAa-------CGGGCGUa-G-UUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 27372 | 1.13 | 0.001268 |
Target: 5'- uCAGUCGAACAUUGCCCGCAUCAACGCg -3' miRNA: 3'- -GUCAGCUUGUAACGGGCGUAGUUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 30707 | 0.68 | 0.784691 |
Target: 5'- uGG-CGGGCAUgGCUuucuccaucggaaUGCGUCAACGCa -3' miRNA: 3'- gUCaGCUUGUAaCGG-------------GCGUAGUUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 31682 | 0.68 | 0.779451 |
Target: 5'- aAGUCGAGCGc-GCCCuuggcgagcagcaagGCGaCGACGCa -3' miRNA: 3'- gUCAGCUUGUaaCGGG---------------CGUaGUUGCG- -5' |
|||||||
26483 | 3' | -50.3 | NC_005357.1 | + | 32701 | 0.68 | 0.785734 |
Target: 5'- ---aCGAGCAguucGCCCGCGgcuUCGAgGCg -3' miRNA: 3'- gucaGCUUGUaa--CGGGCGU---AGUUgCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home