miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26483 3' -50.3 NC_005357.1 + 42038 0.67 0.862353
Target:  5'- aCAGUCGcGCGcUGgCCGCGcUCAAUcgGCa -3'
miRNA:   3'- -GUCAGCuUGUaACgGGCGU-AGUUG--CG- -5'
26483 3' -50.3 NC_005357.1 + 39681 0.66 0.88696
Target:  5'- uGGUCG-GCAc-GCCCGag-CAGCGCc -3'
miRNA:   3'- gUCAGCuUGUaaCGGGCguaGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 39370 0.66 0.904781
Target:  5'- aAGUgGGgcGCAUucucggcuccuggauUGCCCGCGUgAAuCGCa -3'
miRNA:   3'- gUCAgCU--UGUA---------------ACGGGCGUAgUU-GCG- -5'
26483 3' -50.3 NC_005357.1 + 39333 0.67 0.844599
Target:  5'- --uUCGGugGUUGCCgCGUGUCGAaggGCa -3'
miRNA:   3'- gucAGCUugUAACGG-GCGUAGUUg--CG- -5'
26483 3' -50.3 NC_005357.1 + 38711 0.67 0.82489
Target:  5'- ---gCGAGCAUgagcggaUGCgCCGCAUggggCAGCGCg -3'
miRNA:   3'- gucaGCUUGUA-------ACG-GGCGUA----GUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 38241 0.66 0.894593
Target:  5'- gCGGcC-AACA-UGCCCGCcAUCGAgGCg -3'
miRNA:   3'- -GUCaGcUUGUaACGGGCG-UAGUUgCG- -5'
26483 3' -50.3 NC_005357.1 + 37358 0.66 0.88696
Target:  5'- gCGGUCG-GCAaUGCCgacaaCAUCAAUGCa -3'
miRNA:   3'- -GUCAGCuUGUaACGGgc---GUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 35048 0.68 0.816133
Target:  5'- aGGUCGccGCggUGCCCGCcgCuggacgaacGACGCc -3'
miRNA:   3'- gUCAGCu-UGuaACGGGCGuaG---------UUGCG- -5'
26483 3' -50.3 NC_005357.1 + 34382 0.7 0.709205
Target:  5'- uGGUCGAGCAgcgGUUgaGCGUCGAgGCu -3'
miRNA:   3'- gUCAGCUUGUaa-CGGg-CGUAGUUgCG- -5'
26483 3' -50.3 NC_005357.1 + 33885 0.66 0.870833
Target:  5'- aGGUCGAGCGcgGCCUGCGaUAccuGgGCa -3'
miRNA:   3'- gUCAGCUUGUaaCGGGCGUaGU---UgCG- -5'
26483 3' -50.3 NC_005357.1 + 33865 0.72 0.559316
Target:  5'- -uGUCGcGCcugucgcUGCCCGcCAUCGGCGCg -3'
miRNA:   3'- guCAGCuUGua-----ACGGGC-GUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 32831 0.67 0.853605
Target:  5'- -cGUCGAACucacGCCCGaggugcgCAACGUg -3'
miRNA:   3'- guCAGCUUGuaa-CGGGCgua----GUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 32701 0.68 0.785734
Target:  5'- ---aCGAGCAguucGCCCGCGgcuUCGAgGCg -3'
miRNA:   3'- gucaGCUUGUaa--CGGGCGU---AGUUgCG- -5'
26483 3' -50.3 NC_005357.1 + 31682 0.68 0.779451
Target:  5'- aAGUCGAGCGc-GCCCuuggcgagcagcaagGCGaCGACGCa -3'
miRNA:   3'- gUCAGCUUGUaaCGGG---------------CGUaGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 30707 0.68 0.784691
Target:  5'- uGG-CGGGCAUgGCUuucuccaucggaaUGCGUCAACGCa -3'
miRNA:   3'- gUCaGCUUGUAaCGG-------------GCGUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 27372 1.13 0.001268
Target:  5'- uCAGUCGAACAUUGCCCGCAUCAACGCg -3'
miRNA:   3'- -GUCAGCUUGUAACGGGCGUAGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 27028 0.68 0.785734
Target:  5'- uCGGUCGuccgGCAUcuucgccgGCCCGCAcgCgGACGCg -3'
miRNA:   3'- -GUCAGCu---UGUAa-------CGGGCGUa-G-UUGCG- -5'
26483 3' -50.3 NC_005357.1 + 26699 0.68 0.806199
Target:  5'- -uGUCGAGCGcaugGCCuCGCGccaguUCGAUGCc -3'
miRNA:   3'- guCAGCUUGUaa--CGG-GCGU-----AGUUGCG- -5'
26483 3' -50.3 NC_005357.1 + 24785 0.69 0.731693
Target:  5'- gGGUCGuccuCGaUGCCCGCGUUGAaguCGCc -3'
miRNA:   3'- gUCAGCuu--GUaACGGGCGUAGUU---GCG- -5'
26483 3' -50.3 NC_005357.1 + 22052 0.68 0.816133
Target:  5'- gCGGUCGucGCGcUUGCUCGgGUCGcggucgGCGCg -3'
miRNA:   3'- -GUCAGCu-UGU-AACGGGCgUAGU------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.