miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26483 5' -52.9 NC_005357.1 + 29683 0.66 0.787905
Target:  5'- -cGCGCCAagcgucuggGCGCGGcacccaGCACCAaCGGGc -3'
miRNA:   3'- guUGUGGU---------UGCGCC------UGUGGUaGCUCa -5'
26483 5' -52.9 NC_005357.1 + 13939 0.66 0.787905
Target:  5'- gCAGCGCCGugGacuGGAUGCCcUCGGa- -3'
miRNA:   3'- -GUUGUGGUugCg--CCUGUGGuAGCUca -5'
26483 5' -52.9 NC_005357.1 + 27048 0.66 0.777634
Target:  5'- cCGGC-CCGcACGCGGACGCgcuCAcCGAGg -3'
miRNA:   3'- -GUUGuGGU-UGCGCCUGUG---GUaGCUCa -5'
26483 5' -52.9 NC_005357.1 + 2943 0.66 0.777634
Target:  5'- -cACACCGcgucGCGCGG-CA-CGUCGAGc -3'
miRNA:   3'- guUGUGGU----UGCGCCuGUgGUAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 23468 0.66 0.76615
Target:  5'- -cACGCCGGCGUGGaacagguGCGCCGU-GGGa -3'
miRNA:   3'- guUGUGGUUGCGCC-------UGUGGUAgCUCa -5'
26483 5' -52.9 NC_005357.1 + 35986 0.66 0.75662
Target:  5'- gCGACGCCuuCGCGGGCGgUGgugucgCGAGc -3'
miRNA:   3'- -GUUGUGGuuGCGCCUGUgGUa-----GCUCa -5'
26483 5' -52.9 NC_005357.1 + 17994 0.66 0.75662
Target:  5'- cCGAgGCC-GCGCGcGGCACCGacaaaUCGGGc -3'
miRNA:   3'- -GUUgUGGuUGCGC-CUGUGGU-----AGCUCa -5'
26483 5' -52.9 NC_005357.1 + 27388 0.66 0.75662
Target:  5'- -cGCAUCAACGCGGGCAUCg------ -3'
miRNA:   3'- guUGUGGUUGCGCCUGUGGuagcuca -5'
26483 5' -52.9 NC_005357.1 + 32289 0.66 0.750205
Target:  5'- aAACACCAGCGCGuugcgcgaccucaucGcCGCCAUCaAGg -3'
miRNA:   3'- gUUGUGGUUGCGC---------------CuGUGGUAGcUCa -5'
26483 5' -52.9 NC_005357.1 + 26725 0.66 0.745902
Target:  5'- uCGAUGCCcAgGCGGACGCCuucuucGUCGAu- -3'
miRNA:   3'- -GUUGUGGuUgCGCCUGUGG------UAGCUca -5'
26483 5' -52.9 NC_005357.1 + 22214 0.66 0.745902
Target:  5'- cCAACAgCCGGcCGCGGGCgcuGCCAagacCGAGg -3'
miRNA:   3'- -GUUGU-GGUU-GCGCCUG---UGGUa---GCUCa -5'
26483 5' -52.9 NC_005357.1 + 28872 0.66 0.745902
Target:  5'- uCAACAUCGcCGUGGGCACC---GAGUc -3'
miRNA:   3'- -GUUGUGGUuGCGCCUGUGGuagCUCA- -5'
26483 5' -52.9 NC_005357.1 + 37475 0.66 0.745902
Target:  5'- gCAGCGCgAuACGCGG-CugCAUCGuGg -3'
miRNA:   3'- -GUUGUGgU-UGCGCCuGugGUAGCuCa -5'
26483 5' -52.9 NC_005357.1 + 37379 0.66 0.744823
Target:  5'- ---gGCCugUGCucaagcaGGACGCCAUCGAGc -3'
miRNA:   3'- guugUGGuuGCG-------CCUGUGGUAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 30370 0.67 0.735061
Target:  5'- gGACACCAu--CGG-CGCCAUCGAc- -3'
miRNA:   3'- gUUGUGGUugcGCCuGUGGUAGCUca -5'
26483 5' -52.9 NC_005357.1 + 23097 0.67 0.735061
Target:  5'- cCGACGCCAACgGCGG-CGCCcacggCGAc- -3'
miRNA:   3'- -GUUGUGGUUG-CGCCuGUGGua---GCUca -5'
26483 5' -52.9 NC_005357.1 + 26583 0.67 0.735061
Target:  5'- uGGCACCAGCacgacaCGGACGgCGuguUCGAGUc -3'
miRNA:   3'- gUUGUGGUUGc-----GCCUGUgGU---AGCUCA- -5'
26483 5' -52.9 NC_005357.1 + 33113 0.67 0.735061
Target:  5'- -cGCGCCGACGUGcGcCGCCAggucgcCGAGg -3'
miRNA:   3'- guUGUGGUUGCGC-CuGUGGUa-----GCUCa -5'
26483 5' -52.9 NC_005357.1 + 11124 0.67 0.728502
Target:  5'- cCAGCcggGCCAccACGCGGuCGCCAggcuucgcugccacgUCGGGg -3'
miRNA:   3'- -GUUG---UGGU--UGCGCCuGUGGU---------------AGCUCa -5'
26483 5' -52.9 NC_005357.1 + 7766 0.67 0.724109
Target:  5'- gCAGCACCGGCGCGaucuGCGCCggCGu-- -3'
miRNA:   3'- -GUUGUGGUUGCGCc---UGUGGuaGCuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.