miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26483 5' -52.9 NC_005357.1 + 461 0.68 0.634008
Target:  5'- ---gGCCAGCuuGCGGGCGCUGUCGcGGUc -3'
miRNA:   3'- guugUGGUUG--CGCCUGUGGUAGC-UCA- -5'
26483 5' -52.9 NC_005357.1 + 619 0.69 0.565992
Target:  5'- cCAGCAgCGcCGUGGACACggcguccggCGUCGAGUc -3'
miRNA:   3'- -GUUGUgGUuGCGCCUGUG---------GUAGCUCA- -5'
26483 5' -52.9 NC_005357.1 + 2854 0.72 0.417852
Target:  5'- cCAGCACCAGCGagGGGCcugguucgACCAguUCGAGg -3'
miRNA:   3'- -GUUGUGGUUGCg-CCUG--------UGGU--AGCUCa -5'
26483 5' -52.9 NC_005357.1 + 2943 0.66 0.777634
Target:  5'- -cACACCGcgucGCGCGG-CA-CGUCGAGc -3'
miRNA:   3'- guUGUGGU----UGCGCCuGUgGUAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 4676 0.69 0.611233
Target:  5'- gGGCACCAGCGCgccGGAUAgCGcggCGAGa -3'
miRNA:   3'- gUUGUGGUUGCG---CCUGUgGUa--GCUCa -5'
26483 5' -52.9 NC_005357.1 + 5108 0.69 0.599869
Target:  5'- cCAGCGuCCggUGCGGcugGCGCCGUUGAa- -3'
miRNA:   3'- -GUUGU-GGuuGCGCC---UGUGGUAGCUca -5'
26483 5' -52.9 NC_005357.1 + 5573 0.72 0.398625
Target:  5'- aCGGCGCCAACGCuGGcCGCCAcCGuGUc -3'
miRNA:   3'- -GUUGUGGUUGCG-CCuGUGGUaGCuCA- -5'
26483 5' -52.9 NC_005357.1 + 7766 0.67 0.724109
Target:  5'- gCAGCACCGGCGCGaucuGCGCCggCGu-- -3'
miRNA:   3'- -GUUGUGGUUGCGCc---UGUGGuaGCuca -5'
26483 5' -52.9 NC_005357.1 + 8443 0.68 0.656776
Target:  5'- gAACAUCGGCGCGauguCGgCGUCGAGg -3'
miRNA:   3'- gUUGUGGUUGCGCcu--GUgGUAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 8877 0.69 0.599869
Target:  5'- aCGAaGCgGGCGCGGGCAUCAUUGuGa -3'
miRNA:   3'- -GUUgUGgUUGCGCCUGUGGUAGCuCa -5'
26483 5' -52.9 NC_005357.1 + 11124 0.67 0.728502
Target:  5'- cCAGCcggGCCAccACGCGGuCGCCAggcuucgcugccacgUCGGGg -3'
miRNA:   3'- -GUUG---UGGU--UGCGCCuGUGGU---------------AGCUCa -5'
26483 5' -52.9 NC_005357.1 + 13939 0.66 0.787905
Target:  5'- gCAGCGCCGugGacuGGAUGCCcUCGGa- -3'
miRNA:   3'- -GUUGUGGUugCg--CCUGUGGuAGCUca -5'
26483 5' -52.9 NC_005357.1 + 14565 0.67 0.690715
Target:  5'- gAugGCgAGCGCGGACACguUCuuGAGc -3'
miRNA:   3'- gUugUGgUUGCGCCUGUGguAG--CUCa -5'
26483 5' -52.9 NC_005357.1 + 14603 0.74 0.335965
Target:  5'- cCGGCGCCAcCGCGGGCAgCGcgcgCGAGg -3'
miRNA:   3'- -GUUGUGGUuGCGCCUGUgGUa---GCUCa -5'
26483 5' -52.9 NC_005357.1 + 14858 0.67 0.724109
Target:  5'- cCAGCGCCGcACGCuGGGCGCCuUUaAGUu -3'
miRNA:   3'- -GUUGUGGU-UGCG-CCUGUGGuAGcUCA- -5'
26483 5' -52.9 NC_005357.1 + 15962 0.67 0.713059
Target:  5'- gAAUGCCAACuGaCGGAUGCCgagGUCGAGc -3'
miRNA:   3'- gUUGUGGUUG-C-GCCUGUGG---UAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 16868 0.72 0.408168
Target:  5'- aCAACuCCGACGCcGACAUCAUCGGc- -3'
miRNA:   3'- -GUUGuGGUUGCGcCUGUGGUAGCUca -5'
26483 5' -52.9 NC_005357.1 + 17638 0.68 0.645399
Target:  5'- gCGACuuCAACGCGGGCA---UCGAGg -3'
miRNA:   3'- -GUUGugGUUGCGCCUGUgguAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 17920 0.67 0.690715
Target:  5'- aCGugAUCGGCGUGGGCGCCAgccccuaCGAc- -3'
miRNA:   3'- -GUugUGGUUGCGCCUGUGGUa------GCUca -5'
26483 5' -52.9 NC_005357.1 + 17994 0.66 0.75662
Target:  5'- cCGAgGCC-GCGCGcGGCACCGacaaaUCGGGc -3'
miRNA:   3'- -GUUgUGGuUGCGC-CUGUGGU-----AGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.