miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26483 5' -52.9 NC_005357.1 + 18165 0.7 0.526039
Target:  5'- cCGGCGCCAcgcucaagguggcaaGcCGCgaGGACAUCAUCGAGa -3'
miRNA:   3'- -GUUGUGGU---------------U-GCG--CCUGUGGUAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 18262 0.7 0.554803
Target:  5'- -cACGCCGaaGCGCGca-GCCGUCGAGg -3'
miRNA:   3'- guUGUGGU--UGCGCcugUGGUAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 19348 0.71 0.489318
Target:  5'- aGGCGCCAgGCgGCGGAauuGCCGUUGAGg -3'
miRNA:   3'- gUUGUGGU-UG-CGCCUg--UGGUAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 22214 0.66 0.745902
Target:  5'- cCAACAgCCGGcCGCGGGCgcuGCCAagacCGAGg -3'
miRNA:   3'- -GUUGU-GGUU-GCGCCUG---UGGUa---GCUCa -5'
26483 5' -52.9 NC_005357.1 + 23097 0.67 0.735061
Target:  5'- cCGACGCCAACgGCGG-CGCCcacggCGAc- -3'
miRNA:   3'- -GUUGUGGUUG-CGCCuGUGGua---GCUca -5'
26483 5' -52.9 NC_005357.1 + 23468 0.66 0.76615
Target:  5'- -cACGCCGGCGUGGaacagguGCGCCGU-GGGa -3'
miRNA:   3'- guUGUGGUUGCGCC-------UGUGGUAgCUCa -5'
26483 5' -52.9 NC_005357.1 + 23510 0.83 0.091082
Target:  5'- aAACGCCAGCGCGGGCGCCGaccucaUCGAc- -3'
miRNA:   3'- gUUGUGGUUGCGCCUGUGGU------AGCUca -5'
26483 5' -52.9 NC_005357.1 + 23751 0.67 0.713059
Target:  5'- gCAGCGCC-AUGCcGGCGCCAcCGGGc -3'
miRNA:   3'- -GUUGUGGuUGCGcCUGUGGUaGCUCa -5'
26483 5' -52.9 NC_005357.1 + 24031 0.7 0.521662
Target:  5'- --uCGCCGACGUGGccgccaccgGCGCCAUCGGc- -3'
miRNA:   3'- guuGUGGUUGCGCC---------UGUGGUAGCUca -5'
26483 5' -52.9 NC_005357.1 + 24868 0.7 0.510783
Target:  5'- aCAACACCGGCGCcGACAUCAUUc--- -3'
miRNA:   3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5'
26483 5' -52.9 NC_005357.1 + 25014 0.67 0.713059
Target:  5'- uCAAgGgCGACGUGGGCGCCGcugaaUCGAa- -3'
miRNA:   3'- -GUUgUgGUUGCGCCUGUGGU-----AGCUca -5'
26483 5' -52.9 NC_005357.1 + 25820 0.7 0.510783
Target:  5'- --uCACCAACgGCGGcgccaACACCAUCGcGUg -3'
miRNA:   3'- guuGUGGUUG-CGCC-----UGUGGUAGCuCA- -5'
26483 5' -52.9 NC_005357.1 + 26583 0.67 0.735061
Target:  5'- uGGCACCAGCacgacaCGGACGgCGuguUCGAGUc -3'
miRNA:   3'- gUUGUGGUUGc-----GCCUGUgGU---AGCUCA- -5'
26483 5' -52.9 NC_005357.1 + 26725 0.66 0.745902
Target:  5'- uCGAUGCCcAgGCGGACGCCuucuucGUCGAu- -3'
miRNA:   3'- -GUUGUGGuUgCGCCUGUGG------UAGCUca -5'
26483 5' -52.9 NC_005357.1 + 27048 0.66 0.777634
Target:  5'- cCGGC-CCGcACGCGGACGCgcuCAcCGAGg -3'
miRNA:   3'- -GUUGuGGU-UGCGCCUGUG---GUaGCUCa -5'
26483 5' -52.9 NC_005357.1 + 27167 0.72 0.447725
Target:  5'- -cGCGCCGcACGCGGAUGCC-UCGAc- -3'
miRNA:   3'- guUGUGGU-UGCGCCUGUGGuAGCUca -5'
26483 5' -52.9 NC_005357.1 + 27388 0.66 0.75662
Target:  5'- -cGCAUCAACGCGGGCAUCg------ -3'
miRNA:   3'- guUGUGGUUGCGCCUGUGGuagcuca -5'
26483 5' -52.9 NC_005357.1 + 27407 1.07 0.001811
Target:  5'- cCAACACCAACGCGGACACCAUCGAGUc -3'
miRNA:   3'- -GUUGUGGUUGCGCCUGUGGUAGCUCA- -5'
26483 5' -52.9 NC_005357.1 + 27440 0.71 0.457943
Target:  5'- gCAACGCCAAUGCcGACGCCAUUc--- -3'
miRNA:   3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5'
26483 5' -52.9 NC_005357.1 + 28398 0.68 0.645399
Target:  5'- uCGACGCCGGCgGCGcGGCGCCAguaGAu- -3'
miRNA:   3'- -GUUGUGGUUG-CGC-CUGUGGUag-CUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.