miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26483 5' -52.9 NC_005357.1 + 40851 0.67 0.713059
Target:  5'- uGugGCagGACGUGGaggacuugaGCACCAUCGAGc -3'
miRNA:   3'- gUugUGg-UUGCGCC---------UGUGGUAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 38702 0.68 0.656776
Target:  5'- cCAcCACCGGCGUgaacggcacGGGCGCCA-CGAGc -3'
miRNA:   3'- -GUuGUGGUUGCG---------CCUGUGGUaGCUCa -5'
26483 5' -52.9 NC_005357.1 + 38096 0.75 0.280805
Target:  5'- cCAGCAUCAAgGCuGGCACCAUCGuGg -3'
miRNA:   3'- -GUUGUGGUUgCGcCUGUGGUAGCuCa -5'
26483 5' -52.9 NC_005357.1 + 37692 0.68 0.679446
Target:  5'- cCGugGCCGAgaacauCGCGGuCAUCAUCGAa- -3'
miRNA:   3'- -GUugUGGUU------GCGCCuGUGGUAGCUca -5'
26483 5' -52.9 NC_005357.1 + 37475 0.66 0.745902
Target:  5'- gCAGCGCgAuACGCGG-CugCAUCGuGg -3'
miRNA:   3'- -GUUGUGgU-UGCGCCuGugGUAGCuCa -5'
26483 5' -52.9 NC_005357.1 + 37379 0.66 0.744823
Target:  5'- ---gGCCugUGCucaagcaGGACGCCAUCGAGc -3'
miRNA:   3'- guugUGGuuGCG-------CCUGUGGUAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 37188 0.67 0.701923
Target:  5'- cCAACGCCAACGUcaACACCGUgGcGUc -3'
miRNA:   3'- -GUUGUGGUUGCGccUGUGGUAgCuCA- -5'
26483 5' -52.9 NC_005357.1 + 36850 0.72 0.408168
Target:  5'- uCGACACgGugGCGGccagcguugGCGCCGUCGAu- -3'
miRNA:   3'- -GUUGUGgUugCGCC---------UGUGGUAGCUca -5'
26483 5' -52.9 NC_005357.1 + 36814 0.69 0.588534
Target:  5'- cCAACAUCGACGcCGuGGCuACCAaCGAGg -3'
miRNA:   3'- -GUUGUGGUUGC-GC-CUG-UGGUaGCUCa -5'
26483 5' -52.9 NC_005357.1 + 35986 0.66 0.75662
Target:  5'- gCGACGCCuuCGCGGGCGgUGgugucgCGAGc -3'
miRNA:   3'- -GUUGUGGuuGCGCCUGUgGUa-----GCUCa -5'
26483 5' -52.9 NC_005357.1 + 34257 0.76 0.245321
Target:  5'- gGACGCCAGCGCcuuccugGGccGCAUCAUCGAGg -3'
miRNA:   3'- gUUGUGGUUGCG-------CC--UGUGGUAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 33844 0.68 0.645399
Target:  5'- cCAGCACCAggccgcacGCGCGGccuacgACGCCcaggaugagGUCGAGc -3'
miRNA:   3'- -GUUGUGGU--------UGCGCC------UGUGG---------UAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 33113 0.67 0.735061
Target:  5'- -cGCGCCGACGUGcGcCGCCAggucgcCGAGg -3'
miRNA:   3'- guUGUGGUUGCGC-CuGUGGUa-----GCUCa -5'
26483 5' -52.9 NC_005357.1 + 32289 0.66 0.750205
Target:  5'- aAACACCAGCGCGuugcgcgaccucaucGcCGCCAUCaAGg -3'
miRNA:   3'- gUUGUGGUUGCGC---------------CuGUGGUAGcUCa -5'
26483 5' -52.9 NC_005357.1 + 31353 0.68 0.645399
Target:  5'- -cGCGCgCGACcCGGACACguUCGAGc -3'
miRNA:   3'- guUGUG-GUUGcGCCUGUGguAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 30462 0.67 0.701923
Target:  5'- -cGCACgaCAACGUGGACAacaugaccggCAUCGAGUc -3'
miRNA:   3'- guUGUG--GUUGCGCCUGUg---------GUAGCUCA- -5'
26483 5' -52.9 NC_005357.1 + 30370 0.67 0.735061
Target:  5'- gGACACCAu--CGG-CGCCAUCGAc- -3'
miRNA:   3'- gUUGUGGUugcGCCuGUGGUAGCUca -5'
26483 5' -52.9 NC_005357.1 + 29683 0.66 0.787905
Target:  5'- -cGCGCCAagcgucuggGCGCGGcacccaGCACCAaCGGGc -3'
miRNA:   3'- guUGUGGU---------UGCGCC------UGUGGUaGCUCa -5'
26483 5' -52.9 NC_005357.1 + 29257 0.7 0.542571
Target:  5'- gGGCGCCcAGCGCGGccgACACuggccgaCAUCGAGg -3'
miRNA:   3'- gUUGUGG-UUGCGCC---UGUG-------GUAGCUCa -5'
26483 5' -52.9 NC_005357.1 + 28872 0.66 0.745902
Target:  5'- uCAACAUCGcCGUGGGCACC---GAGUc -3'
miRNA:   3'- -GUUGUGGUuGCGCCUGUGGuagCUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.