Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26483 | 5' | -52.9 | NC_005357.1 | + | 23510 | 0.83 | 0.091082 |
Target: 5'- aAACGCCAGCGCGGGCGCCGaccucaUCGAc- -3' miRNA: 3'- gUUGUGGUUGCGCCUGUGGU------AGCUca -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 31353 | 0.68 | 0.645399 |
Target: 5'- -cGCGCgCGACcCGGACACguUCGAGc -3' miRNA: 3'- guUGUG-GUUGcGCCUGUGguAGCUCa -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 8443 | 0.68 | 0.656776 |
Target: 5'- gAACAUCGGCGCGauguCGgCGUCGAGg -3' miRNA: 3'- gUUGUGGUUGCGCcu--GUgGUAGCUCa -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 29683 | 0.66 | 0.787905 |
Target: 5'- -cGCGCCAagcgucuggGCGCGGcacccaGCACCAaCGGGc -3' miRNA: 3'- guUGUGGU---------UGCGCC------UGUGGUaGCUCa -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 36850 | 0.72 | 0.408168 |
Target: 5'- uCGACACgGugGCGGccagcguugGCGCCGUCGAu- -3' miRNA: 3'- -GUUGUGgUugCGCC---------UGUGGUAGCUca -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 2854 | 0.72 | 0.417852 |
Target: 5'- cCAGCACCAGCGagGGGCcugguucgACCAguUCGAGg -3' miRNA: 3'- -GUUGUGGUUGCg-CCUG--------UGGU--AGCUCa -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 24868 | 0.7 | 0.510783 |
Target: 5'- aCAACACCGGCGCcGACAUCAUUc--- -3' miRNA: 3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 25820 | 0.7 | 0.510783 |
Target: 5'- --uCACCAACgGCGGcgccaACACCAUCGcGUg -3' miRNA: 3'- guuGUGGUUG-CGCC-----UGUGGUAGCuCA- -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 29257 | 0.7 | 0.542571 |
Target: 5'- gGGCGCCcAGCGCGGccgACACuggccgaCAUCGAGg -3' miRNA: 3'- gUUGUGG-UUGCGCC---UGUG-------GUAGCUCa -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 17638 | 0.68 | 0.645399 |
Target: 5'- gCGACuuCAACGCGGGCA---UCGAGg -3' miRNA: 3'- -GUUGugGUUGCGCCUGUgguAGCUCa -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 18262 | 0.7 | 0.554803 |
Target: 5'- -cACGCCGaaGCGCGca-GCCGUCGAGg -3' miRNA: 3'- guUGUGGU--UGCGCcugUGGUAGCUCa -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 18165 | 0.7 | 0.526039 |
Target: 5'- cCGGCGCCAcgcucaagguggcaaGcCGCgaGGACAUCAUCGAGa -3' miRNA: 3'- -GUUGUGGU---------------U-GCG--CCUGUGGUAGCUCa -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 38096 | 0.75 | 0.280805 |
Target: 5'- cCAGCAUCAAgGCuGGCACCAUCGuGg -3' miRNA: 3'- -GUUGUGGUUgCGcCUGUGGUAGCuCa -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 36814 | 0.69 | 0.588534 |
Target: 5'- cCAACAUCGACGcCGuGGCuACCAaCGAGg -3' miRNA: 3'- -GUUGUGGUUGC-GC-CUG-UGGUaGCUCa -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 14603 | 0.74 | 0.335965 |
Target: 5'- cCGGCGCCAcCGCGGGCAgCGcgcgCGAGg -3' miRNA: 3'- -GUUGUGGUuGCGCCUGUgGUa---GCUCa -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 24031 | 0.7 | 0.521662 |
Target: 5'- --uCGCCGACGUGGccgccaccgGCGCCAUCGGc- -3' miRNA: 3'- guuGUGGUUGCGCC---------UGUGGUAGCUca -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 5108 | 0.69 | 0.599869 |
Target: 5'- cCAGCGuCCggUGCGGcugGCGCCGUUGAa- -3' miRNA: 3'- -GUUGU-GGuuGCGCC---UGUGGUAGCUca -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 33844 | 0.68 | 0.645399 |
Target: 5'- cCAGCACCAggccgcacGCGCGGccuacgACGCCcaggaugagGUCGAGc -3' miRNA: 3'- -GUUGUGGU--------UGCGCC------UGUGG---------UAGCUCa -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 16868 | 0.72 | 0.408168 |
Target: 5'- aCAACuCCGACGCcGACAUCAUCGGc- -3' miRNA: 3'- -GUUGuGGUUGCGcCUGUGGUAGCUca -5' |
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26483 | 5' | -52.9 | NC_005357.1 | + | 27440 | 0.71 | 0.457943 |
Target: 5'- gCAACGCCAAUGCcGACGCCAUUc--- -3' miRNA: 3'- -GUUGUGGUUGCGcCUGUGGUAGcuca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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