miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26484 3' -59.9 NC_005357.1 + 26833 0.96 0.002753
Target:  5'- uCCUGGCCGAUG-GcGCGGUGCAUCCGCa -3'
miRNA:   3'- -GGACCGGCUACgC-CGCCACGUAGGCG- -5'
26484 3' -59.9 NC_005357.1 + 5600 0.67 0.366146
Target:  5'- uUUGGCCcacucgGCGG-GGUGCGuUUCGCg -3'
miRNA:   3'- gGACCGGcua---CGCCgCCACGU-AGGCG- -5'
26484 3' -59.9 NC_005357.1 + 41606 0.68 0.293197
Target:  5'- aCCUGGCCGAcguucggcaagggcUGgGcGCGGcGCGU-CGCc -3'
miRNA:   3'- -GGACCGGCU--------------ACgC-CGCCaCGUAgGCG- -5'
26484 3' -59.9 NC_005357.1 + 24577 0.69 0.274257
Target:  5'- aCCUGGgCGAcgaggccacgGUGGCGG-GCAUcaacCCGCc -3'
miRNA:   3'- -GGACCgGCUa---------CGCCGCCaCGUA----GGCG- -5'
26484 3' -59.9 NC_005357.1 + 9504 0.69 0.260869
Target:  5'- cCCUGGCCGAacagccagccgUGCaGGCcGUGg--CCGCa -3'
miRNA:   3'- -GGACCGGCU-----------ACG-CCGcCACguaGGCG- -5'
26484 3' -59.9 NC_005357.1 + 22800 0.7 0.241791
Target:  5'- gCUGGCCGAUGUcGCGGcccGCAUgaccCCGg -3'
miRNA:   3'- gGACCGGCUACGcCGCCa--CGUA----GGCg -5'
26484 3' -59.9 NC_005357.1 + 9604 0.66 0.401152
Target:  5'- ---aGCCGuUGCGGCuGGUGUAgUCCGa -3'
miRNA:   3'- ggacCGGCuACGCCG-CCACGU-AGGCg -5'
26484 3' -59.9 NC_005357.1 + 41247 0.67 0.363607
Target:  5'- aCCcGGCCGAccccgGCGGCGagacuauguggggcGUGaCcgCCGCc -3'
miRNA:   3'- -GGaCCGGCUa----CGCCGC--------------CAC-GuaGGCG- -5'
26484 3' -59.9 NC_005357.1 + 13407 0.69 0.267495
Target:  5'- aCCUGGCCGAaGC-GCGGcGCcuggUCGCc -3'
miRNA:   3'- -GGACCGGCUaCGcCGCCaCGua--GGCG- -5'
26484 3' -59.9 NC_005357.1 + 32554 0.72 0.167659
Target:  5'- gCCUGGCCGAgaagcaGCGcGcCGGUGCca-CGCu -3'
miRNA:   3'- -GGACCGGCUa-----CGC-C-GCCACGuagGCG- -5'
26484 3' -59.9 NC_005357.1 + 24984 0.73 0.135064
Target:  5'- aCCUGGCCucGAUGCuGGCGGgGCcaCUGCu -3'
miRNA:   3'- -GGACCGG--CUACG-CCGCCaCGuaGGCG- -5'
26484 3' -59.9 NC_005357.1 + 8649 0.66 0.432531
Target:  5'- cCCaGGCCGcgccguacucgcuguGUGCaGCGGcUGCugcgCCGCc -3'
miRNA:   3'- -GGaCCGGC---------------UACGcCGCC-ACGua--GGCG- -5'
26484 3' -59.9 NC_005357.1 + 31454 0.73 0.150562
Target:  5'- gCCUGGCCGAacagGUGGCcgcaguguccccGGcUGUcgCCGCg -3'
miRNA:   3'- -GGACCGGCUa---CGCCG------------CC-ACGuaGGCG- -5'
26484 3' -59.9 NC_005357.1 + 12541 0.68 0.324659
Target:  5'- gCCUGucauGCCGGggGgGGUGGUGCuagacccGUUCGCa -3'
miRNA:   3'- -GGAC----CGGCUa-CgCCGCCACG-------UAGGCG- -5'
26484 3' -59.9 NC_005357.1 + 5197 0.66 0.438215
Target:  5'- ---uGCUGGUGCuGGUGGUGCuggCCuGCa -3'
miRNA:   3'- ggacCGGCUACG-CCGCCACGua-GG-CG- -5'
26484 3' -59.9 NC_005357.1 + 41315 0.66 0.401152
Target:  5'- aCCgGGCCGAUGCG-CGa--CAUgCCGCg -3'
miRNA:   3'- -GGaCCGGCUACGCcGCcacGUA-GGCG- -5'
26484 3' -59.9 NC_005357.1 + 37067 0.67 0.341308
Target:  5'- cCCUgGGCgCGGUGCaGGCGGccacGCAg-CGCg -3'
miRNA:   3'- -GGA-CCG-GCUACG-CCGCCa---CGUagGCG- -5'
26484 3' -59.9 NC_005357.1 + 1709 0.67 0.341308
Target:  5'- gCCgugGGCCGGcgUGcCGGCGaGgGCGUCCa- -3'
miRNA:   3'- -GGa--CCGGCU--AC-GCCGC-CaCGUAGGcg -5'
26484 3' -59.9 NC_005357.1 + 23770 0.68 0.325438
Target:  5'- aCCgGGCCGAUGCGccGCGGcuacgaagaUGgAUuCCGUg -3'
miRNA:   3'- -GGaCCGGCUACGC--CGCC---------ACgUA-GGCG- -5'
26484 3' -59.9 NC_005357.1 + 8625 0.68 0.317711
Target:  5'- uUCUcGGCCGcUGCGGUGGcgagGUcgCCGg -3'
miRNA:   3'- -GGA-CCGGCuACGCCGCCa---CGuaGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.