miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26484 3' -59.9 NC_005357.1 + 1225 0.66 0.41023
Target:  5'- -aUGGCCGAUGaGGCGGUcgaaaGCGgugUCGa -3'
miRNA:   3'- ggACCGGCUACgCCGCCA-----CGUa--GGCg -5'
26484 3' -59.9 NC_005357.1 + 23770 0.68 0.325438
Target:  5'- aCCgGGCCGAUGCGccGCGGcuacgaagaUGgAUuCCGUg -3'
miRNA:   3'- -GGaCCGGCUACGC--CGCC---------ACgUA-GGCG- -5'
26484 3' -59.9 NC_005357.1 + 1709 0.67 0.341308
Target:  5'- gCCgugGGCCGGcgUGcCGGCGaGgGCGUCCa- -3'
miRNA:   3'- -GGa--CCGGCU--AC-GCCGC-CaCGUAGGcg -5'
26484 3' -59.9 NC_005357.1 + 37067 0.67 0.341308
Target:  5'- cCCUgGGCgCGGUGCaGGCGGccacGCAg-CGCg -3'
miRNA:   3'- -GGA-CCG-GCUACG-CCGCCa---CGUagGCG- -5'
26484 3' -59.9 NC_005357.1 + 13485 0.67 0.355232
Target:  5'- aCCUGGgCGAUGCcgaccgcgccuuugGGCGaGguaagcgguuUGCcGUCCGCg -3'
miRNA:   3'- -GGACCgGCUACG--------------CCGC-C----------ACG-UAGGCG- -5'
26484 3' -59.9 NC_005357.1 + 25785 0.67 0.355232
Target:  5'- -aUGGCCgcGAUGCGcGCGGcGCGcucgguaucguugaUCUGCa -3'
miRNA:   3'- ggACCGG--CUACGC-CGCCaCGU--------------AGGCG- -5'
26484 3' -59.9 NC_005357.1 + 11517 0.67 0.35773
Target:  5'- gCCUGcGCUGGcgugaggcccUGCGaGCGG-GCAUCCu- -3'
miRNA:   3'- -GGAC-CGGCU----------ACGC-CGCCaCGUAGGcg -5'
26484 3' -59.9 NC_005357.1 + 35039 0.66 0.401152
Target:  5'- gCUGGUgGAaggucGCcGCGGUGCccgCCGCu -3'
miRNA:   3'- gGACCGgCUa----CGcCGCCACGua-GGCG- -5'
26484 3' -59.9 NC_005357.1 + 36084 0.66 0.401152
Target:  5'- gCCUucgGGCCGGgcgcuuuggcUGgGGCGGaacGCG-CCGCg -3'
miRNA:   3'- -GGA---CCGGCU----------ACgCCGCCa--CGUaGGCG- -5'
26484 3' -59.9 NC_005357.1 + 8625 0.68 0.317711
Target:  5'- uUCUcGGCCGcUGCGGUGGcgagGUcgCCGg -3'
miRNA:   3'- -GGA-CCGGCuACGCCGCCa---CGuaGGCg -5'
26484 3' -59.9 NC_005357.1 + 21584 0.68 0.310123
Target:  5'- --cGGCCacuucgGUGGCGGU-CAUCUGCg -3'
miRNA:   3'- ggaCCGGcua---CGCCGCCAcGUAGGCG- -5'
26484 3' -59.9 NC_005357.1 + 35855 0.68 0.302674
Target:  5'- cCCUGGCCGAgGCGGaUGGcaaGCccuaCGCg -3'
miRNA:   3'- -GGACCGGCUaCGCC-GCCa--CGuag-GCG- -5'
26484 3' -59.9 NC_005357.1 + 14578 0.75 0.105427
Target:  5'- aCCgGGCUGAUGcCGGCGGccgAUCCGCu -3'
miRNA:   3'- -GGaCCGGCUAC-GCCGCCacgUAGGCG- -5'
26484 3' -59.9 NC_005357.1 + 9317 0.72 0.163228
Target:  5'- aCCUGGCggcgcacguCGgcGCGGCGGgcggcgGCAUCCu- -3'
miRNA:   3'- -GGACCG---------GCuaCGCCGCCa-----CGUAGGcg -5'
26484 3' -59.9 NC_005357.1 + 41958 0.71 0.196565
Target:  5'- aCUGGCgauuguCGAaGCGGUGGUGCG-CgGCg -3'
miRNA:   3'- gGACCG------GCUaCGCCGCCACGUaGgCG- -5'
26484 3' -59.9 NC_005357.1 + 14836 0.71 0.207128
Target:  5'- cCCaGGUCGAUGCcguuGGCGGccaGCG-CCGCa -3'
miRNA:   3'- -GGaCCGGCUACG----CCGCCa--CGUaGGCG- -5'
26484 3' -59.9 NC_005357.1 + 985 0.7 0.218178
Target:  5'- aCUUGGCCGcc-UGGCGGUGCcgugguucaCCGCa -3'
miRNA:   3'- -GGACCGGCuacGCCGCCACGua-------GGCG- -5'
26484 3' -59.9 NC_005357.1 + 4287 0.7 0.22389
Target:  5'- -aUGGCCG-UGuCGGCGGUGaa-CUGCa -3'
miRNA:   3'- ggACCGGCuAC-GCCGCCACguaGGCG- -5'
26484 3' -59.9 NC_005357.1 + 11182 0.69 0.281155
Target:  5'- gCUGGUCGGccGUGGUgauGGUGCGgucaaugCCGCg -3'
miRNA:   3'- gGACCGGCUa-CGCCG---CCACGUa------GGCG- -5'
26484 3' -59.9 NC_005357.1 + 19478 0.69 0.28819
Target:  5'- gCUUGcGCCaGGUGcCGGUGG-GCAggCCGCu -3'
miRNA:   3'- -GGAC-CGG-CUAC-GCCGCCaCGUa-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.