Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26484 | 3' | -59.9 | NC_005357.1 | + | 19478 | 0.69 | 0.28819 |
Target: 5'- gCUUGcGCCaGGUGcCGGUGG-GCAggCCGCu -3' miRNA: 3'- -GGAC-CGG-CUAC-GCCGCCaCGUa-GGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 35855 | 0.68 | 0.302674 |
Target: 5'- cCCUGGCCGAgGCGGaUGGcaaGCccuaCGCg -3' miRNA: 3'- -GGACCGGCUaCGCC-GCCa--CGuag-GCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 21584 | 0.68 | 0.310123 |
Target: 5'- --cGGCCacuucgGUGGCGGU-CAUCUGCg -3' miRNA: 3'- ggaCCGGcua---CGCCGCCAcGUAGGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 12541 | 0.68 | 0.324659 |
Target: 5'- gCCUGucauGCCGGggGgGGUGGUGCuagacccGUUCGCa -3' miRNA: 3'- -GGAC----CGGCUa-CgCCGCCACG-------UAGGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 41247 | 0.67 | 0.363607 |
Target: 5'- aCCcGGCCGAccccgGCGGCGagacuauguggggcGUGaCcgCCGCc -3' miRNA: 3'- -GGaCCGGCUa----CGCCGC--------------CAC-GuaGGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 5600 | 0.67 | 0.366146 |
Target: 5'- uUUGGCCcacucgGCGG-GGUGCGuUUCGCg -3' miRNA: 3'- gGACCGGcua---CGCCgCCACGU-AGGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 41315 | 0.66 | 0.401152 |
Target: 5'- aCCgGGCCGAUGCG-CGa--CAUgCCGCg -3' miRNA: 3'- -GGaCCGGCUACGCcGCcacGUA-GGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 9604 | 0.66 | 0.401152 |
Target: 5'- ---aGCCGuUGCGGCuGGUGUAgUCCGa -3' miRNA: 3'- ggacCGGCuACGCCG-CCACGU-AGGCg -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 8649 | 0.66 | 0.432531 |
Target: 5'- cCCaGGCCGcgccguacucgcuguGUGCaGCGGcUGCugcgCCGCc -3' miRNA: 3'- -GGaCCGGC---------------UACGcCGCC-ACGua--GGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 41606 | 0.68 | 0.293197 |
Target: 5'- aCCUGGCCGAcguucggcaagggcUGgGcGCGGcGCGU-CGCc -3' miRNA: 3'- -GGACCGGCU--------------ACgC-CGCCaCGUAgGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 24577 | 0.69 | 0.274257 |
Target: 5'- aCCUGGgCGAcgaggccacgGUGGCGG-GCAUcaacCCGCc -3' miRNA: 3'- -GGACCgGCUa---------CGCCGCCaCGUA----GGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 13407 | 0.69 | 0.267495 |
Target: 5'- aCCUGGCCGAaGC-GCGGcGCcuggUCGCc -3' miRNA: 3'- -GGACCGGCUaCGcCGCCaCGua--GGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 9504 | 0.69 | 0.260869 |
Target: 5'- cCCUGGCCGAacagccagccgUGCaGGCcGUGg--CCGCa -3' miRNA: 3'- -GGACCGGCU-----------ACG-CCGcCACguaGGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 22800 | 0.7 | 0.241791 |
Target: 5'- gCUGGCCGAUGUcGCGGcccGCAUgaccCCGg -3' miRNA: 3'- gGACCGGCUACGcCGCCa--CGUA----GGCg -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 32554 | 0.72 | 0.167659 |
Target: 5'- gCCUGGCCGAgaagcaGCGcGcCGGUGCca-CGCu -3' miRNA: 3'- -GGACCGGCUa-----CGC-C-GCCACGuagGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 31454 | 0.73 | 0.150562 |
Target: 5'- gCCUGGCCGAacagGUGGCcgcaguguccccGGcUGUcgCCGCg -3' miRNA: 3'- -GGACCGGCUa---CGCCG------------CC-ACGuaGGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 24984 | 0.73 | 0.135064 |
Target: 5'- aCCUGGCCucGAUGCuGGCGGgGCcaCUGCu -3' miRNA: 3'- -GGACCGG--CUACG-CCGCCaCGuaGGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 26833 | 0.96 | 0.002753 |
Target: 5'- uCCUGGCCGAUG-GcGCGGUGCAUCCGCa -3' miRNA: 3'- -GGACCGGCUACgC-CGCCACGUAGGCG- -5' |
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26484 | 3' | -59.9 | NC_005357.1 | + | 5197 | 0.66 | 0.438215 |
Target: 5'- ---uGCUGGUGCuGGUGGUGCuggCCuGCa -3' miRNA: 3'- ggacCGGCUACG-CCGCCACGua-GG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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