miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26485 5' -56.1 NC_005357.1 + 4815 0.66 0.637166
Target:  5'- gCGGgaUUGcUgGCCGGCGACagGUCgCCg -3'
miRNA:   3'- -GCCaaAGC-AgUGGCCGCUGgaCAG-GG- -5'
26485 5' -56.1 NC_005357.1 + 23080 0.66 0.637166
Target:  5'- aCGGcaauucCGcCGCCuGGCG-CCUGUCCg -3'
miRNA:   3'- -GCCaaa---GCaGUGG-CCGCuGGACAGGg -5'
26485 5' -56.1 NC_005357.1 + 25323 0.66 0.637166
Target:  5'- cCGGcgcUCGUCGCCGG-GA-UUGUCCa -3'
miRNA:   3'- -GCCaa-AGCAGUGGCCgCUgGACAGGg -5'
26485 5' -56.1 NC_005357.1 + 6828 0.66 0.637166
Target:  5'- gGGUUUCGUCGuugcccUCGGCGACg-G-CCUu -3'
miRNA:   3'- gCCAAAGCAGU------GGCCGCUGgaCaGGG- -5'
26485 5' -56.1 NC_005357.1 + 30204 0.66 0.615241
Target:  5'- -----cUGUUGCCGGUGugCUgcGUCCCg -3'
miRNA:   3'- gccaaaGCAGUGGCCGCugGA--CAGGG- -5'
26485 5' -56.1 NC_005357.1 + 12896 0.66 0.615241
Target:  5'- uGGUgUCGUCGCCuuuGGCGaugcgcucgGCCgcgCCCa -3'
miRNA:   3'- gCCAaAGCAGUGG---CCGC---------UGGacaGGG- -5'
26485 5' -56.1 NC_005357.1 + 8991 0.67 0.582486
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26485 5' -56.1 NC_005357.1 + 8944 0.67 0.582486
Target:  5'- cCGGaUUCGcCAgCGGUGGCC-GUgCCg -3'
miRNA:   3'- -GCCaAAGCaGUgGCCGCUGGaCAgGG- -5'
26485 5' -56.1 NC_005357.1 + 12023 0.67 0.582486
Target:  5'- gCGGc--CGUgGCCGGCGAgguCUUG-CCCa -3'
miRNA:   3'- -GCCaaaGCAgUGGCCGCU---GGACaGGG- -5'
26485 5' -56.1 NC_005357.1 + 14415 0.67 0.582486
Target:  5'- uGGg--CGUCGCCaGGCGcGCCUGcggCaCCg -3'
miRNA:   3'- gCCaaaGCAGUGG-CCGC-UGGACa--G-GG- -5'
26485 5' -56.1 NC_005357.1 + 30986 0.67 0.571638
Target:  5'- aCGGUggaCGaUCugCucacgcGCGACCUGUCCa -3'
miRNA:   3'- -GCCAaa-GC-AGugGc-----CGCUGGACAGGg -5'
26485 5' -56.1 NC_005357.1 + 34392 0.67 0.569474
Target:  5'- gCGGUUgagcgucgaggcUGUCACCGGCGAagCUGgcgCCa -3'
miRNA:   3'- -GCCAAa-----------GCAGUGGCCGCUg-GACa--GGg -5'
26485 5' -56.1 NC_005357.1 + 18460 0.68 0.53942
Target:  5'- aCGGUcgCGgCGCCGGCGGCgUcggccgauucGUCCa -3'
miRNA:   3'- -GCCAaaGCaGUGGCCGCUGgA----------CAGGg -5'
26485 5' -56.1 NC_005357.1 + 25669 0.68 0.53942
Target:  5'- -----aCGUCGCCGGUGGCUacgCCCa -3'
miRNA:   3'- gccaaaGCAGUGGCCGCUGGacaGGG- -5'
26485 5' -56.1 NC_005357.1 + 30870 0.68 0.53942
Target:  5'- uGGcUUCGaUgACCGGCGGgCaGUCCUa -3'
miRNA:   3'- gCCaAAGC-AgUGGCCGCUgGaCAGGG- -5'
26485 5' -56.1 NC_005357.1 + 5917 0.68 0.528814
Target:  5'- cCGGcaucuUUUCGcCGCUGGCGGCa--UCCCa -3'
miRNA:   3'- -GCC-----AAAGCaGUGGCCGCUGgacAGGG- -5'
26485 5' -56.1 NC_005357.1 + 22444 0.68 0.497487
Target:  5'- gCGaGUUcuacgCGgaCAUCGGCGGCCUG-CCCg -3'
miRNA:   3'- -GC-CAAa----GCa-GUGGCCGCUGGACaGGG- -5'
26485 5' -56.1 NC_005357.1 + 27882 0.68 0.496457
Target:  5'- gGGUUucUCGUCgcuguuguccggcGCCGGCGACgUGgcugauUCCUg -3'
miRNA:   3'- gCCAA--AGCAG-------------UGGCCGCUGgAC------AGGG- -5'
26485 5' -56.1 NC_005357.1 + 20666 0.69 0.46702
Target:  5'- -----cCGU-GCCgGGCGGCCUGUCCUa -3'
miRNA:   3'- gccaaaGCAgUGG-CCGCUGGACAGGG- -5'
26485 5' -56.1 NC_005357.1 + 24126 0.69 0.447253
Target:  5'- aGGggUCGUaguccaGCCGGCugcgcGCCUGgCCCa -3'
miRNA:   3'- gCCaaAGCAg-----UGGCCGc----UGGACaGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.