miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26487 3' -54.5 NC_005357.1 + 5010 0.67 0.631215
Target:  5'- uCGGCGCaGUCCGCUu--UCaGcGCCGCg -3'
miRNA:   3'- -GUUGCGgUAGGCGGuauAG-CaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 5125 0.69 0.488293
Target:  5'- uGGCGCCGUugaaCUGCaa---CGUGCCGCg -3'
miRNA:   3'- gUUGCGGUA----GGCGguauaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 5579 0.76 0.188864
Target:  5'- cCAACGCUggCCGCCAccgUGUCGaUGuCCGCc -3'
miRNA:   3'- -GUUGCGGuaGGCGGU---AUAGC-AC-GGCG- -5'
26487 3' -54.5 NC_005357.1 + 5806 0.76 0.194126
Target:  5'- gCAGCGCCAgcggauagUCgGgCAUggCGUGCCGCa -3'
miRNA:   3'- -GUUGCGGU--------AGgCgGUAuaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 5896 0.68 0.540882
Target:  5'- uCAACGCCcaCCGCag-AUCGUccggcaucuuuucGCCGCu -3'
miRNA:   3'- -GUUGCGGuaGGCGguaUAGCA-------------CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 6577 0.7 0.467519
Target:  5'- --uUGCCAUCCGCC---UCGgccaggggGCUGCg -3'
miRNA:   3'- guuGCGGUAGGCGGuauAGCa-------CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 7230 0.69 0.47785
Target:  5'- -uGCGCCGcgcucacccUCgGCgAUGUCG-GCCGCc -3'
miRNA:   3'- guUGCGGU---------AGgCGgUAUAGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 7972 0.66 0.687314
Target:  5'- uCGGCGCgCAUCgGguuuCCAUGUC--GCCGCg -3'
miRNA:   3'- -GUUGCG-GUAGgC----GGUAUAGcaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 8663 0.71 0.389393
Target:  5'- -cGCGCgGUCgGCauug-CGUGCCGCg -3'
miRNA:   3'- guUGCGgUAGgCGguauaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 8741 0.66 0.709446
Target:  5'- gGACaCCAgggCgCGCgCGUAUucaCGUGCCGCu -3'
miRNA:   3'- gUUGcGGUa--G-GCG-GUAUA---GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 8806 0.67 0.597476
Target:  5'- -cGCGCCGgucaguaccgaUCUGCUggGUCGggccaGCCGCa -3'
miRNA:   3'- guUGCGGU-----------AGGCGGuaUAGCa----CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 8934 0.73 0.319519
Target:  5'- gGugGCCGUgccggauUCGCCAgcgGUggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-------GGCGGUa--UA---GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9005 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9053 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9101 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9149 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9197 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9490 0.66 0.652605
Target:  5'- gGGCGUCAugccagccuguUCCGCCGUggcgaacaguggcAUCaUGCUGCg -3'
miRNA:   3'- gUUGCGGU-----------AGGCGGUA-------------UAGcACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 10316 0.66 0.676159
Target:  5'- aCuuCGCCAguUUCGCCAggcCGUaGCCGUc -3'
miRNA:   3'- -GuuGCGGU--AGGCGGUauaGCA-CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 10666 0.68 0.564013
Target:  5'- aAACGCg--CCGCCGUGUCcaGuuGCg -3'
miRNA:   3'- gUUGCGguaGGCGGUAUAGcaCggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.