miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26487 3' -54.5 NC_005357.1 + 42221 0.72 0.328432
Target:  5'- -uGCGCCAgUUCGCCGUGUCGcccgGCaGCg -3'
miRNA:   3'- guUGCGGU-AGGCGGUAUAGCa---CGgCG- -5'
26487 3' -54.5 NC_005357.1 + 13527 0.72 0.345106
Target:  5'- --uUGCCGUCCgcGCCGaacUGUCG-GCCGCc -3'
miRNA:   3'- guuGCGGUAGG--CGGU---AUAGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 8663 0.71 0.389393
Target:  5'- -cGCGCgGUCgGCauug-CGUGCCGCg -3'
miRNA:   3'- guUGCGgUAGgCGguauaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 41801 0.71 0.398686
Target:  5'- uCGACGCCGgaCGCCGUGUCcacggcGCUGCu -3'
miRNA:   3'- -GUUGCGGUagGCGGUAUAGca----CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 1009 0.71 0.402442
Target:  5'- -cGCGCCAcuggccgggaaauacUCgGCCAUGcugaaCGUGCCGUg -3'
miRNA:   3'- guUGCGGU---------------AGgCGGUAUa----GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 35986 0.71 0.40812
Target:  5'- gCGACGCC-UUCGCgGgcgGUgGUGUCGCg -3'
miRNA:   3'- -GUUGCGGuAGGCGgUa--UAgCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 37920 0.71 0.40812
Target:  5'- -uGCGCCAagCGCC-UGUgGcGCCGCg -3'
miRNA:   3'- guUGCGGUagGCGGuAUAgCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 32547 0.71 0.417692
Target:  5'- gGAUGCUG-CCGCCGg--CGaUGCCGCu -3'
miRNA:   3'- gUUGCGGUaGGCGGUauaGC-ACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 24591 0.7 0.4274
Target:  5'- ---gGCCGUCCGgCGUGUCcuUGCCGg -3'
miRNA:   3'- guugCGGUAGGCgGUAUAGc-ACGGCg -5'
26487 3' -54.5 NC_005357.1 + 18117 0.7 0.43724
Target:  5'- -cGCGCCGUCCGgUAcGUCGaacuUGUCGCc -3'
miRNA:   3'- guUGCGGUAGGCgGUaUAGC----ACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 36617 0.7 0.43724
Target:  5'- -cACGCCAugcccgacuaUCCGCUGg--CGcUGCCGCg -3'
miRNA:   3'- guUGCGGU----------AGGCGGUauaGC-ACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 4656 0.7 0.43724
Target:  5'- ---gGCCAUCgCGUCAagGUCGaUGCCGUa -3'
miRNA:   3'- guugCGGUAG-GCGGUa-UAGC-ACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 25049 0.7 0.44721
Target:  5'- -cGCGCgAUCCGCCGUuaccAUCGgGCaGCa -3'
miRNA:   3'- guUGCGgUAGGCGGUA----UAGCaCGgCG- -5'
26487 3' -54.5 NC_005357.1 + 4412 0.7 0.457304
Target:  5'- ---aGCCGUUUucaCCAgAUCGUGCCGCg -3'
miRNA:   3'- guugCGGUAGGc--GGUaUAGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 6577 0.7 0.467519
Target:  5'- --uUGCCAUCCGCC---UCGgccaggggGCUGCg -3'
miRNA:   3'- guuGCGGUAGGCGGuauAGCa-------CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 4515 0.7 0.467519
Target:  5'- gCGGCGCCcgUgaacguggcgUGCUGggcgGUCGUGCCGCc -3'
miRNA:   3'- -GUUGCGGuaG----------GCGGUa---UAGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 25381 0.7 0.471638
Target:  5'- aGGCGCCAgaagCCcuuuugcgaguuguaGCCGUc-CGUGCCGCc -3'
miRNA:   3'- gUUGCGGUa---GG---------------CGGUAuaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 7230 0.69 0.47785
Target:  5'- -uGCGCCGcgcucacccUCgGCgAUGUCG-GCCGCc -3'
miRNA:   3'- guUGCGGU---------AGgCGgUAUAGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 1160 0.69 0.482014
Target:  5'- --uCGCCGUCgauggugaaggacaGCCGUAUCGcgcUGCCGUg -3'
miRNA:   3'- guuGCGGUAGg-------------CGGUAUAGC---ACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 14821 0.69 0.488293
Target:  5'- gCGGCGCUGccUUCGCCcagGUCGaUGCCGUu -3'
miRNA:   3'- -GUUGCGGU--AGGCGGua-UAGC-ACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.