Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26487 | 3' | -54.5 | NC_005357.1 | + | 33249 | 0.66 | 0.676159 |
Target: 5'- cCAACGUCGacggCGCCAaguUGUCGcUGCCGg -3' miRNA: 3'- -GUUGCGGUag--GCGGU---AUAGC-ACGGCg -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 10316 | 0.66 | 0.676159 |
Target: 5'- aCuuCGCCAguUUCGCCAggcCGUaGCCGUc -3' miRNA: 3'- -GuuGCGGU--AGGCGGUauaGCA-CGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 31496 | 0.66 | 0.676159 |
Target: 5'- uGACauaCCuugCCGCCGg--CGUGCUGCu -3' miRNA: 3'- gUUGc--GGua-GGCGGUauaGCACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 27669 | 0.66 | 0.676159 |
Target: 5'- gGGCGCCAccUCCaCCGUGgucUUGgaauacagGCCGCg -3' miRNA: 3'- gUUGCGGU--AGGcGGUAU---AGCa-------CGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 20105 | 0.66 | 0.676159 |
Target: 5'- uCGGCGCguUCggcacgGCCAgcagcAUCGUGCUGCc -3' miRNA: 3'- -GUUGCGguAGg-----CGGUa----UAGCACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 2094 | 0.66 | 0.675041 |
Target: 5'- uCGGC-CCAgguggUCGCCGUGUCGUcgguauagauugcGCCGUu -3' miRNA: 3'- -GUUGcGGUa----GGCGGUAUAGCA-------------CGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 4098 | 0.66 | 0.675041 |
Target: 5'- -uGCGCCGugguguuUCCGCCAgccUGcGCUGCa -3' miRNA: 3'- guUGCGGU-------AGGCGGUauaGCaCGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 17294 | 0.66 | 0.669444 |
Target: 5'- cCGGCGCCGcgggcgcgcauccauUCCGgCAUAUgG-GCCGg -3' miRNA: 3'- -GUUGCGGU---------------AGGCgGUAUAgCaCGGCg -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 16284 | 0.66 | 0.66496 |
Target: 5'- aCGGCgaGCCGcUgCGCCAaAUC-UGCCGCg -3' miRNA: 3'- -GUUG--CGGU-AgGCGGUaUAGcACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 15735 | 0.66 | 0.66496 |
Target: 5'- gCGAgGCCAUgCGCUcgAcauaccgcaccUCGuUGCCGCc -3' miRNA: 3'- -GUUgCGGUAgGCGGuaU-----------AGC-ACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 24694 | 0.66 | 0.66496 |
Target: 5'- -cACGCCcaggcuGUCCaucgguGCCAgucgGUCGgGCCGCu -3' miRNA: 3'- guUGCGG------UAGG------CGGUa---UAGCaCGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 34425 | 0.66 | 0.66496 |
Target: 5'- uGGCGCCAagggcacgUCCgacGCCGUG--GUGCUGCu -3' miRNA: 3'- gUUGCGGU--------AGG---CGGUAUagCACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 4178 | 0.66 | 0.66496 |
Target: 5'- ---aGCCggCCGCCucgauggcgggcAUGUUG-GCCGCg -3' miRNA: 3'- guugCGGuaGGCGG------------UAUAGCaCGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 25987 | 0.66 | 0.658224 |
Target: 5'- aCGACGCCGUguucaacgCCGCCGgcgauuaccccgCG-GCCGUg -3' miRNA: 3'- -GUUGCGGUA--------GGCGGUaua---------GCaCGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 14531 | 0.66 | 0.653729 |
Target: 5'- --gUGCCAUCCGCgA---CGUGCUGg -3' miRNA: 3'- guuGCGGUAGGCGgUauaGCACGGCg -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 16651 | 0.66 | 0.653729 |
Target: 5'- -cGCGCgCAUCgCgGCCA--UCGuUGCCGCc -3' miRNA: 3'- guUGCG-GUAG-G-CGGUauAGC-ACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 9490 | 0.66 | 0.652605 |
Target: 5'- gGGCGUCAugccagccuguUCCGCCGUggcgaacaguggcAUCaUGCUGCg -3' miRNA: 3'- gUUGCGGU-----------AGGCGGUA-------------UAGcACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 190 | 0.67 | 0.643603 |
Target: 5'- cCGGCGUCAUccCCGCCAUcagcAUCaugguggcguagguaUGCCGCa -3' miRNA: 3'- -GUUGCGGUA--GGCGGUA----UAGc--------------ACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 35134 | 0.67 | 0.631215 |
Target: 5'- aCGGCGCCAUCCGCgAgcacuaCG-GCCcCg -3' miRNA: 3'- -GUUGCGGUAGGCGgUaua---GCaCGGcG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 5010 | 0.67 | 0.631215 |
Target: 5'- uCGGCGCaGUCCGCUu--UCaGcGCCGCg -3' miRNA: 3'- -GUUGCGgUAGGCGGuauAG-CaCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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