miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26487 3' -54.5 NC_005357.1 + 5010 0.67 0.631215
Target:  5'- uCGGCGCaGUCCGCUu--UCaGcGCCGCg -3'
miRNA:   3'- -GUUGCGgUAGGCGGuauAG-CaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 4016 0.67 0.619954
Target:  5'- -cGCGCCggCCaCCAgcGUCaUGCCGCg -3'
miRNA:   3'- guUGCGGuaGGcGGUa-UAGcACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 34257 0.67 0.619954
Target:  5'- gGACGCCAg-CGCCu--UCcuggGCCGCa -3'
miRNA:   3'- gUUGCGGUagGCGGuauAGca--CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 14603 0.67 0.613202
Target:  5'- cCGGCGCCA-CCGCgGgcagcgcgcgcgagGaCGUGCUGCg -3'
miRNA:   3'- -GUUGCGGUaGGCGgUa-------------UaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 8806 0.67 0.597476
Target:  5'- -cGCGCCGgucaguaccgaUCUGCUggGUCGggccaGCCGCa -3'
miRNA:   3'- guUGCGGU-----------AGGCGGuaUAGCa----CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 26162 0.68 0.586278
Target:  5'- --uCGCCGUCUGCgAUG-CG-GUCGCa -3'
miRNA:   3'- guuGCGGUAGGCGgUAUaGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 25354 0.68 0.586278
Target:  5'- -cGCGCCGgcUUCGCCu--UCGUG-CGCg -3'
miRNA:   3'- guUGCGGU--AGGCGGuauAGCACgGCG- -5'
26487 3' -54.5 NC_005357.1 + 38618 0.68 0.575121
Target:  5'- aCGGCGCCcccgaCCGCCugGUCaUGCUGCc -3'
miRNA:   3'- -GUUGCGGua---GGCGGuaUAGcACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 30195 0.68 0.564013
Target:  5'- uCGAUGCCGcugUUGCCGg--UGUGCUGCg -3'
miRNA:   3'- -GUUGCGGUa--GGCGGUauaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 24416 0.68 0.564013
Target:  5'- aAGCGCag-CCgGCCcgauuUGUCgGUGCCGCg -3'
miRNA:   3'- gUUGCGguaGG-CGGu----AUAG-CACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 10666 0.68 0.564013
Target:  5'- aAACGCg--CCGCCGUGUCcaGuuGCg -3'
miRNA:   3'- gUUGCGguaGGCGGUAUAGcaCggCG- -5'
26487 3' -54.5 NC_005357.1 + 19615 0.68 0.564013
Target:  5'- --uUGCCGUCCgggGUCAUG-CGgGCCGCg -3'
miRNA:   3'- guuGCGGUAGG---CGGUAUaGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 41698 0.68 0.552962
Target:  5'- ---gGUCAUCCGCCAggcgcUCGacuugGCCGUg -3'
miRNA:   3'- guugCGGUAGGCGGUau---AGCa----CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 37097 0.68 0.552962
Target:  5'- gCGAUGCCAugcUgCGCCA---CGUGCuCGCg -3'
miRNA:   3'- -GUUGCGGU---AgGCGGUauaGCACG-GCG- -5'
26487 3' -54.5 NC_005357.1 + 5896 0.68 0.540882
Target:  5'- uCAACGCCcaCCGCag-AUCGUccggcaucuuuucGCCGCu -3'
miRNA:   3'- -GUUGCGGuaGGCGguaUAGCA-------------CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 26115 0.68 0.531065
Target:  5'- -uGCGCCAUgCCGgCAUGuguUCGUcGCgGCa -3'
miRNA:   3'- guUGCGGUA-GGCgGUAU---AGCA-CGgCG- -5'
26487 3' -54.5 NC_005357.1 + 4947 0.68 0.531065
Target:  5'- gGGCGCCAcgaugcagCCG-CGUAUCGcGCUGCu -3'
miRNA:   3'- gUUGCGGUa-------GGCgGUAUAGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 3869 0.69 0.509491
Target:  5'- aGGCGCCGU-CGCUGUAg---GCCGCg -3'
miRNA:   3'- gUUGCGGUAgGCGGUAUagcaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 19117 0.69 0.498842
Target:  5'- -cACGUCAUCCcgGCCAgugcCG-GCCGCa -3'
miRNA:   3'- guUGCGGUAGG--CGGUaua-GCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 3753 0.69 0.489343
Target:  5'- -cACGUCGgugCCGCCGcuggacguagccucgGUCGUGCCGa -3'
miRNA:   3'- guUGCGGUa--GGCGGUa--------------UAGCACGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.