miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26487 3' -54.5 NC_005357.1 + 26182 1.11 0.000586
Target:  5'- cCAACGCCAUCCGCCAUAUCGUGCCGCu -3'
miRNA:   3'- -GUUGCGGUAGGCGGUAUAGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 16942 0.81 0.087512
Target:  5'- aCGGCGCCGUCCaGCag---CGUGCCGCg -3'
miRNA:   3'- -GUUGCGGUAGG-CGguauaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 33834 0.8 0.110413
Target:  5'- -uACGCCAUCCccacggucGCCGUgaccGUCGUGUCGCg -3'
miRNA:   3'- guUGCGGUAGG--------CGGUA----UAGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 13882 0.77 0.164403
Target:  5'- gAugGCCGgcggCCGCaagGUCGUGCCGUu -3'
miRNA:   3'- gUugCGGUa---GGCGguaUAGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 4391 0.77 0.169056
Target:  5'- aGGCGCCGUCgCGCCGggccuugagCGUGCgGCa -3'
miRNA:   3'- gUUGCGGUAG-GCGGUaua------GCACGgCG- -5'
26487 3' -54.5 NC_005357.1 + 5579 0.76 0.188864
Target:  5'- cCAACGCUggCCGCCAccgUGUCGaUGuCCGCc -3'
miRNA:   3'- -GUUGCGGuaGGCGGU---AUAGC-AC-GGCG- -5'
26487 3' -54.5 NC_005357.1 + 5806 0.76 0.194126
Target:  5'- gCAGCGCCAgcggauagUCgGgCAUggCGUGCCGCa -3'
miRNA:   3'- -GUUGCGGU--------AGgCgGUAuaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 17798 0.75 0.215885
Target:  5'- --cCGCCGgcaCGCCAUGUgguucgaCGUGCCGCu -3'
miRNA:   3'- guuGCGGUag-GCGGUAUA-------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 15844 0.74 0.247458
Target:  5'- -cACGCCGUCCGU---GUCGUGCUGg -3'
miRNA:   3'- guUGCGGUAGGCGguaUAGCACGGCg -5'
26487 3' -54.5 NC_005357.1 + 9005 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9053 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9149 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9101 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9197 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 24019 0.74 0.260848
Target:  5'- aCAACGCCAccUUCGCCGa--CGUGgCCGCc -3'
miRNA:   3'- -GUUGCGGU--AGGCGGUauaGCAC-GGCG- -5'
26487 3' -54.5 NC_005357.1 + 13155 0.74 0.274821
Target:  5'- -uGCGCCucgauGUCgGCCAgUGUCG-GCCGCg -3'
miRNA:   3'- guUGCGG-----UAGgCGGU-AUAGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 32067 0.73 0.28203
Target:  5'- gCGACGCCAUgcucaucggccCCGCCAacaCG-GCCGCg -3'
miRNA:   3'- -GUUGCGGUA-----------GGCGGUauaGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 24775 0.73 0.312362
Target:  5'- cCGACGCCAUCaagaucgugGCCGUA-C-UGCCGCa -3'
miRNA:   3'- -GUUGCGGUAGg--------CGGUAUaGcACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 8934 0.73 0.319519
Target:  5'- gGugGCCGUgccggauUCGCCAgcgGUggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-------GGCGGUa--UA---GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 295 0.72 0.327615
Target:  5'- -uGCGCCGgaaggcgcgcucuUCCGuCCAgggCGUGCCGUa -3'
miRNA:   3'- guUGCGGU-------------AGGC-GGUauaGCACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.