Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26487 | 3' | -54.5 | NC_005357.1 | + | 3753 | 0.69 | 0.489343 |
Target: 5'- -cACGUCGgugCCGCCGcuggacguagccucgGUCGUGCCGa -3' miRNA: 3'- guUGCGGUa--GGCGGUa--------------UAGCACGGCg -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 36617 | 0.7 | 0.43724 |
Target: 5'- -cACGCCAugcccgacuaUCCGCUGg--CGcUGCCGCg -3' miRNA: 3'- guUGCGGU----------AGGCGGUauaGC-ACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 18117 | 0.7 | 0.43724 |
Target: 5'- -cGCGCCGUCCGgUAcGUCGaacuUGUCGCc -3' miRNA: 3'- guUGCGGUAGGCgGUaUAGC----ACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 25049 | 0.7 | 0.44721 |
Target: 5'- -cGCGCgAUCCGCCGUuaccAUCGgGCaGCa -3' miRNA: 3'- guUGCGgUAGGCGGUA----UAGCaCGgCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 4412 | 0.7 | 0.457304 |
Target: 5'- ---aGCCGUUUucaCCAgAUCGUGCCGCg -3' miRNA: 3'- guugCGGUAGGc--GGUaUAGCACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 4515 | 0.7 | 0.467519 |
Target: 5'- gCGGCGCCcgUgaacguggcgUGCUGggcgGUCGUGCCGCc -3' miRNA: 3'- -GUUGCGGuaG----------GCGGUa---UAGCACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 25381 | 0.7 | 0.471638 |
Target: 5'- aGGCGCCAgaagCCcuuuugcgaguuguaGCCGUc-CGUGCCGCc -3' miRNA: 3'- gUUGCGGUa---GG---------------CGGUAuaGCACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 7230 | 0.69 | 0.47785 |
Target: 5'- -uGCGCCGcgcucacccUCgGCgAUGUCG-GCCGCc -3' miRNA: 3'- guUGCGGU---------AGgCGgUAUAGCaCGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 14821 | 0.69 | 0.488293 |
Target: 5'- gCGGCGCUGccUUCGCCcagGUCGaUGCCGUu -3' miRNA: 3'- -GUUGCGGU--AGGCGGua-UAGC-ACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 24591 | 0.7 | 0.4274 |
Target: 5'- ---gGCCGUCCGgCGUGUCcuUGCCGg -3' miRNA: 3'- guugCGGUAGGCgGUAUAGc-ACGGCg -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 32547 | 0.71 | 0.417692 |
Target: 5'- gGAUGCUG-CCGCCGg--CGaUGCCGCu -3' miRNA: 3'- gUUGCGGUaGGCGGUauaGC-ACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 35986 | 0.71 | 0.40812 |
Target: 5'- gCGACGCC-UUCGCgGgcgGUgGUGUCGCg -3' miRNA: 3'- -GUUGCGGuAGGCGgUa--UAgCACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 33834 | 0.8 | 0.110413 |
Target: 5'- -uACGCCAUCCccacggucGCCGUgaccGUCGUGUCGCg -3' miRNA: 3'- guUGCGGUAGG--------CGGUA----UAGCACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 5579 | 0.76 | 0.188864 |
Target: 5'- cCAACGCUggCCGCCAccgUGUCGaUGuCCGCc -3' miRNA: 3'- -GUUGCGGuaGGCGGU---AUAGC-AC-GGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 15844 | 0.74 | 0.247458 |
Target: 5'- -cACGCCGUCCGU---GUCGUGCUGg -3' miRNA: 3'- guUGCGGUAGGCGguaUAGCACGGCg -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 13155 | 0.74 | 0.274821 |
Target: 5'- -uGCGCCucgauGUCgGCCAgUGUCG-GCCGCg -3' miRNA: 3'- guUGCGG-----UAGgCGGU-AUAGCaCGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 32067 | 0.73 | 0.28203 |
Target: 5'- gCGACGCCAUgcucaucggccCCGCCAacaCG-GCCGCg -3' miRNA: 3'- -GUUGCGGUA-----------GGCGGUauaGCaCGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 13527 | 0.72 | 0.345106 |
Target: 5'- --uUGCCGUCCgcGCCGaacUGUCG-GCCGCc -3' miRNA: 3'- guuGCGGUAGG--CGGU---AUAGCaCGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 8663 | 0.71 | 0.389393 |
Target: 5'- -cGCGCgGUCgGCauug-CGUGCCGCg -3' miRNA: 3'- guUGCGgUAGgCGguauaGCACGGCG- -5' |
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26487 | 3' | -54.5 | NC_005357.1 | + | 37920 | 0.71 | 0.40812 |
Target: 5'- -uGCGCCAagCGCC-UGUgGcGCCGCg -3' miRNA: 3'- guUGCGGUagGCGGuAUAgCaCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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