miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26487 3' -54.5 NC_005357.1 + 26182 1.11 0.000586
Target:  5'- cCAACGCCAUCCGCCAUAUCGUGCCGCu -3'
miRNA:   3'- -GUUGCGGUAGGCGGUAUAGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 4656 0.7 0.43724
Target:  5'- ---gGCCAUCgCGUCAagGUCGaUGCCGUa -3'
miRNA:   3'- guugCGGUAG-GCGGUa-UAGC-ACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 1160 0.69 0.482014
Target:  5'- --uCGCCGUCgauggugaaggacaGCCGUAUCGcgcUGCCGUg -3'
miRNA:   3'- guuGCGGUAGg-------------CGGUAUAGC---ACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 12453 0.66 0.709446
Target:  5'- uCGACGgcugCAUCCagGCCGUcgUGcGCCGCg -3'
miRNA:   3'- -GUUGCg---GUAGG--CGGUAuaGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 17798 0.75 0.215885
Target:  5'- --cCGCCGgcaCGCCAUGUgguucgaCGUGCCGCu -3'
miRNA:   3'- guuGCGGUag-GCGGUAUA-------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9005 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9101 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9149 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 24775 0.73 0.312362
Target:  5'- cCGACGCCAUCaagaucgugGCCGUA-C-UGCCGCa -3'
miRNA:   3'- -GUUGCGGUAGg--------CGGUAUaGcACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 1009 0.71 0.402442
Target:  5'- -cGCGCCAcuggccgggaaauacUCgGCCAUGcugaaCGUGCCGUg -3'
miRNA:   3'- guUGCGGU---------------AGgCGGUAUa----GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 295 0.72 0.327615
Target:  5'- -uGCGCCGgaaggcgcgcucuUCCGuCCAgggCGUGCCGUa -3'
miRNA:   3'- guUGCGGU-------------AGGC-GGUauaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 24019 0.74 0.260848
Target:  5'- aCAACGCCAccUUCGCCGa--CGUGgCCGCc -3'
miRNA:   3'- -GUUGCGGU--AGGCGGUauaGCAC-GGCG- -5'
26487 3' -54.5 NC_005357.1 + 13882 0.77 0.164403
Target:  5'- gAugGCCGgcggCCGCaagGUCGUGCCGUu -3'
miRNA:   3'- gUugCGGUa---GGCGguaUAGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 42221 0.72 0.328432
Target:  5'- -uGCGCCAgUUCGCCGUGUCGcccgGCaGCg -3'
miRNA:   3'- guUGCGGU-AGGCGGUAUAGCa---CGgCG- -5'
26487 3' -54.5 NC_005357.1 + 4391 0.77 0.169056
Target:  5'- aGGCGCCGUCgCGCCGggccuugagCGUGCgGCa -3'
miRNA:   3'- gUUGCGGUAG-GCGGUaua------GCACGgCG- -5'
26487 3' -54.5 NC_005357.1 + 9197 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 41801 0.71 0.398686
Target:  5'- uCGACGCCGgaCGCCGUGUCcacggcGCUGCu -3'
miRNA:   3'- -GUUGCGGUagGCGGUAUAGca----CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 6577 0.7 0.467519
Target:  5'- --uUGCCAUCCGCC---UCGgccaggggGCUGCg -3'
miRNA:   3'- guuGCGGUAGGCGGuauAGCa-------CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 5806 0.76 0.194126
Target:  5'- gCAGCGCCAgcggauagUCgGgCAUggCGUGCCGCa -3'
miRNA:   3'- -GUUGCGGU--------AGgCgGUAuaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 9053 0.74 0.252744
Target:  5'- gGugGCCGUgCCGCgAUAgccagcgguggcCGUGCCGCg -3'
miRNA:   3'- gUugCGGUA-GGCGgUAUa-----------GCACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.