miRNA display CGI


Results 21 - 40 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 4667 0.66 0.786831
Target:  5'- -gUUGuuGGCggGC-ACCAGCGcGCCGg -3'
miRNA:   3'- gaAACggCCG--UGaUGGUUGUuCGGCg -5'
26488 5' -52.6 NC_005357.1 + 9319 0.66 0.765894
Target:  5'- --cUGgCGGCGCacgucgGCgCGGCGGGCgGCg -3'
miRNA:   3'- gaaACgGCCGUGa-----UG-GUUGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 33741 0.66 0.776444
Target:  5'- --cUGCgCGGCGCacaccugggcgGCgCAGC-AGCCGCu -3'
miRNA:   3'- gaaACG-GCCGUGa----------UG-GUUGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 18797 0.66 0.790937
Target:  5'- ---cGCCGGCuaccGCgaaACCAACcgcacguuuuaccggGGGCUGCa -3'
miRNA:   3'- gaaaCGGCCG----UGa--UGGUUG---------------UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 1181 0.66 0.754115
Target:  5'- ---aGCCGuaucGCGCUGCCGugAAuuucuacGCCGUc -3'
miRNA:   3'- gaaaCGGC----CGUGAUGGUugUU-------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 23183 0.66 0.776444
Target:  5'- --cUGCUGGUGCgacAgCAGCAGGUCGg -3'
miRNA:   3'- gaaACGGCCGUGa--UgGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 13777 0.66 0.765894
Target:  5'- ---cGCCGGCACcgauCUGGCAcuGCgCGCg -3'
miRNA:   3'- gaaaCGGCCGUGau--GGUUGUu-CG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 17278 0.66 0.765894
Target:  5'- -aUUGCCGucCACgaaGCCGGC--GCCGCg -3'
miRNA:   3'- gaAACGGCc-GUGa--UGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 33764 0.66 0.786831
Target:  5'- ---cGCgCGGCACgcaaUGCCGACcgcgcgaugaAGGCCGg -3'
miRNA:   3'- gaaaCG-GCCGUG----AUGGUUG----------UUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 19421 0.66 0.744356
Target:  5'- ---aGCaGGCGC-AgCAGCAGGCCGa -3'
miRNA:   3'- gaaaCGgCCGUGaUgGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 14675 0.66 0.776444
Target:  5'- ---aGCCGG-ACgagGgCAGCGAGuuGCg -3'
miRNA:   3'- gaaaCGGCCgUGa--UgGUUGUUCggCG- -5'
26488 5' -52.6 NC_005357.1 + 21154 0.66 0.786831
Target:  5'- gCUggGCCGaCACUuacGCCGACAuGCUGg -3'
miRNA:   3'- -GAaaCGGCcGUGA---UGGUUGUuCGGCg -5'
26488 5' -52.6 NC_005357.1 + 27985 0.66 0.786831
Target:  5'- gCUggGCCaucaGGCugUaGCCGAUGAGgCGCu -3'
miRNA:   3'- -GAaaCGG----CCGugA-UGGUUGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 3885 0.67 0.733395
Target:  5'- ---gGCC-GCGCUGCCGuc--GCCGCc -3'
miRNA:   3'- gaaaCGGcCGUGAUGGUuguuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8744 0.67 0.699897
Target:  5'- ---gGCgCGGCGCUACCGucaACAuggaauuuGCgCGCg -3'
miRNA:   3'- gaaaCG-GCCGUGAUGGU---UGUu-------CG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 37617 0.67 0.699897
Target:  5'- ---cGCCGGCcCcgACCucuACAAGCUGg -3'
miRNA:   3'- gaaaCGGCCGuGa-UGGu--UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 19945 0.67 0.722322
Target:  5'- -cUUGUCGGCcguggacagGCaACCcagguuucgGGCAGGCCGCc -3'
miRNA:   3'- gaAACGGCCG---------UGaUGG---------UUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 19631 0.67 0.699897
Target:  5'- ---aGuCCGGCACcaUGCUGACcGGcCCGCa -3'
miRNA:   3'- gaaaC-GGCCGUG--AUGGUUGuUC-GGCG- -5'
26488 5' -52.6 NC_005357.1 + 7653 0.67 0.733395
Target:  5'- ---cGCCGGCuccUUGCCGuacACGcGCCGUu -3'
miRNA:   3'- gaaaCGGCCGu--GAUGGU---UGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 4293 0.67 0.733395
Target:  5'- --nUGUCGGCggugaACUgcACCAGCuuGCCGUu -3'
miRNA:   3'- gaaACGGCCG-----UGA--UGGUUGuuCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.