Results 1 - 20 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26488 | 5' | -52.6 | NC_005357.1 | + | 33741 | 0.66 | 0.776444 |
Target: 5'- --cUGCgCGGCGCacaccugggcgGCgCAGC-AGCCGCu -3' miRNA: 3'- gaaACG-GCCGUGa----------UG-GUUGuUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 39565 | 0.66 | 0.755193 |
Target: 5'- -cUUGCaUGGCuCUGCCAACGcuacGGCUugGCg -3' miRNA: 3'- gaAACG-GCCGuGAUGGUUGU----UCGG--CG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 9319 | 0.66 | 0.765894 |
Target: 5'- --cUGgCGGCGCacgucgGCgCGGCGGGCgGCg -3' miRNA: 3'- gaaACgGCCGUGa-----UG-GUUGUUCGgCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 4667 | 0.66 | 0.786831 |
Target: 5'- -gUUGuuGGCggGC-ACCAGCGcGCCGg -3' miRNA: 3'- gaAACggCCG--UGaUGGUUGUuCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 525 | 0.66 | 0.755193 |
Target: 5'- ---cGCUGGCcgaaUACCucggacgugcGCGGGCCGCu -3' miRNA: 3'- gaaaCGGCCGug--AUGGu---------UGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 14930 | 0.66 | 0.744356 |
Target: 5'- ---aGCUGGCG--GCCGA--GGCCGCc -3' miRNA: 3'- gaaaCGGCCGUgaUGGUUguUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27985 | 0.66 | 0.786831 |
Target: 5'- gCUggGCCaucaGGCugUaGCCGAUGAGgCGCu -3' miRNA: 3'- -GAaaCGG----CCGugA-UGGUUGUUCgGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 10355 | 0.66 | 0.744356 |
Target: 5'- --gUGuuGGCGggGCCGAUGAGCaugGCg -3' miRNA: 3'- gaaACggCCGUgaUGGUUGUUCGg--CG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 19421 | 0.66 | 0.744356 |
Target: 5'- ---aGCaGGCGC-AgCAGCAGGCCGa -3' miRNA: 3'- gaaaCGgCCGUGaUgGUUGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 15913 | 0.66 | 0.755193 |
Target: 5'- -cUUGCCGcUGCUGCUgaugaaccacacGAUAGGCUGCg -3' miRNA: 3'- gaAACGGCcGUGAUGG------------UUGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 29133 | 0.66 | 0.755193 |
Target: 5'- ---cGCCGGCc---CCGGCGcGCUGCa -3' miRNA: 3'- gaaaCGGCCGugauGGUUGUuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 4695 | 0.66 | 0.765894 |
Target: 5'- ---aGCgCGGCGagaaugGCCGGCAAGuuGUu -3' miRNA: 3'- gaaaCG-GCCGUga----UGGUUGUUCggCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 24383 | 0.66 | 0.762699 |
Target: 5'- ---cGCCGGUaaggcccccaagcaGCccGCCGACAAGaacCCGCa -3' miRNA: 3'- gaaaCGGCCG--------------UGa-UGGUUGUUC---GGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 22156 | 0.66 | 0.744356 |
Target: 5'- --gUGCgGGCAacgacgGCCAACAgcagcaacAGCCGa -3' miRNA: 3'- gaaACGgCCGUga----UGGUUGU--------UCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 18797 | 0.66 | 0.790937 |
Target: 5'- ---cGCCGGCuaccGCgaaACCAACcgcacguuuuaccggGGGCUGCa -3' miRNA: 3'- gaaaCGGCCG----UGa--UGGUUG---------------UUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27247 | 0.66 | 0.751956 |
Target: 5'- ---aGCCGGCGCcccaggcucuugGCCGagGCAAugaaccgcaguucGCCGCg -3' miRNA: 3'- gaaaCGGCCGUGa-----------UGGU--UGUU-------------CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23183 | 0.66 | 0.776444 |
Target: 5'- --cUGCUGGUGCgacAgCAGCAGGUCGg -3' miRNA: 3'- gaaACGGCCGUGa--UgGUUGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23691 | 0.66 | 0.743265 |
Target: 5'- ---gGCCGGaCACguacagGCCGGuagcgccCAGGUCGCg -3' miRNA: 3'- gaaaCGGCC-GUGa-----UGGUU-------GUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 1181 | 0.66 | 0.754115 |
Target: 5'- ---aGCCGuaucGCGCUGCCGugAAuuucuacGCCGUc -3' miRNA: 3'- gaaaCGGC----CGUGAUGGUugUU-------CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 17278 | 0.66 | 0.765894 |
Target: 5'- -aUUGCCGucCACgaaGCCGGC--GCCGCg -3' miRNA: 3'- gaAACGGCc-GUGa--UGGUUGuuCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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