miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 334 0.69 0.608308
Target:  5'- ---gGCUGGCGgUggcgucGCgCAGCAGGCCGUc -3'
miRNA:   3'- gaaaCGGCCGUgA------UG-GUUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 467 0.67 0.715631
Target:  5'- -cUUGCgGGCGCUGucgcggucggaugccUCGGCAGcauacugcGCCGCg -3'
miRNA:   3'- gaAACGgCCGUGAU---------------GGUUGUU--------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 525 0.66 0.755193
Target:  5'- ---cGCUGGCcgaaUACCucggacgugcGCGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCGug--AUGGu---------UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 608 0.68 0.677184
Target:  5'- --cUGCgGGUcg-GCCAGCAGcGCCGUg -3'
miRNA:   3'- gaaACGgCCGugaUGGUUGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 657 0.73 0.348816
Target:  5'- --gUGCCcaaGGCugUaGCCAcCAGGCCGCc -3'
miRNA:   3'- gaaACGG---CCGugA-UGGUuGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 730 0.68 0.677184
Target:  5'- ---gGgCGGCuuUGCCGACAAcGCCGg -3'
miRNA:   3'- gaaaCgGCCGugAUGGUUGUU-CGGCg -5'
26488 5' -52.6 NC_005357.1 + 776 0.66 0.765894
Target:  5'- -cUUGCCGGUcagaucgggccGCUGCgcaaucgccguCAGCAGGUgGCu -3'
miRNA:   3'- gaAACGGCCG-----------UGAUG-----------GUUGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 963 0.69 0.562684
Target:  5'- --gUGCCcacGGCAgCUugCAGCcacuuGGCCGCc -3'
miRNA:   3'- gaaACGG---CCGU-GAugGUUGu----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 1181 0.66 0.754115
Target:  5'- ---aGCCGuaucGCGCUGCCGugAAuuucuacGCCGUc -3'
miRNA:   3'- gaaaCGGC----CGUGAUGGUugUU-------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 1715 0.69 0.618646
Target:  5'- ---gGCCGGCG-UGCCGGCGAGggcguccaaguccUCGCg -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGUUC-------------GGCG- -5'
26488 5' -52.6 NC_005357.1 + 1804 0.67 0.733395
Target:  5'- aUUUGCUGGUACUGuuccaagucCCAcCAguGGCCGa -3'
miRNA:   3'- gAAACGGCCGUGAU---------GGUuGU--UCGGCg -5'
26488 5' -52.6 NC_005357.1 + 1883 0.68 0.654284
Target:  5'- ---gGCCGGCGCUgGCCGGguGGgCGa -3'
miRNA:   3'- gaaaCGGCCGUGA-UGGUUguUCgGCg -5'
26488 5' -52.6 NC_005357.1 + 2005 0.68 0.631294
Target:  5'- uCUUgagGCCcaGGCGCUcGCUGGCgAAGUCGCg -3'
miRNA:   3'- -GAAa--CGG--CCGUGA-UGGUUG-UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 2570 0.7 0.536853
Target:  5'- -aUUGCCGGCuuugaguucagcuuGCaagGCCAGCAGGuuGg -3'
miRNA:   3'- gaAACGGCCG--------------UGa--UGGUUGUUCggCg -5'
26488 5' -52.6 NC_005357.1 + 2744 0.68 0.631294
Target:  5'- ---gGcCCGGCGCUGCUcgGGCGuGCCGa -3'
miRNA:   3'- gaaaC-GGCCGUGAUGG--UUGUuCGGCg -5'
26488 5' -52.6 NC_005357.1 + 3885 0.67 0.733395
Target:  5'- ---gGCC-GCGCUGCCGuc--GCCGCc -3'
miRNA:   3'- gaaaCGGcCGUGAUGGUuguuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 4018 0.75 0.269328
Target:  5'- ---cGCCGGC-C-ACCAGCGucauGCCGCg -3'
miRNA:   3'- gaaaCGGCCGuGaUGGUUGUu---CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 4040 0.7 0.518028
Target:  5'- ---aGCCGGcCGCggcgAgCGGCAGGCCaGCg -3'
miRNA:   3'- gaaaCGGCC-GUGa---UgGUUGUUCGG-CG- -5'
26488 5' -52.6 NC_005357.1 + 4178 0.67 0.722322
Target:  5'- ---aGCCGGcCGCcucgaugGCgGGCAuguuGGCCGCg -3'
miRNA:   3'- gaaaCGGCC-GUGa------UGgUUGU----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 4260 0.7 0.516929
Target:  5'- --gUGCCGGC-CgucagcGCCGGCAuggugauGGCCGUg -3'
miRNA:   3'- gaaACGGCCGuGa-----UGGUUGU-------UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.