Results 1 - 20 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26488 | 5' | -52.6 | NC_005357.1 | + | 26053 | 1.13 | 0.000643 |
Target: 5'- gCUUUGCCGGCACUACCAACAAGCCGCa -3' miRNA: 3'- -GAAACGGCCGUGAUGGUUGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23759 | 0.82 | 0.102723 |
Target: 5'- --aUGCCGGCGCcaccggGCCGAUgcGCCGCg -3' miRNA: 3'- gaaACGGCCGUGa-----UGGUUGuuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 30145 | 0.81 | 0.108976 |
Target: 5'- ---aGCCGGCACgcuggGCCAGCAAcCCGCc -3' miRNA: 3'- gaaaCGGCCGUGa----UGGUUGUUcGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 5074 | 0.81 | 0.122567 |
Target: 5'- -gUUGUCGGCAUUGCCGACc-GCUGCa -3' miRNA: 3'- gaAACGGCCGUGAUGGUUGuuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 28523 | 0.78 | 0.178253 |
Target: 5'- --cUGCCGGCGCUGCUuguugaacGGCAcgaccuugcGGCCGCc -3' miRNA: 3'- gaaACGGCCGUGAUGG--------UUGU---------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 32537 | 0.78 | 0.178253 |
Target: 5'- --aUGCCGGCcaggauGCUGCCGccgGCGAuGCCGCu -3' miRNA: 3'- gaaACGGCCG------UGAUGGU---UGUU-CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 23311 | 0.77 | 0.216788 |
Target: 5'- ---gGCCGGCACUgGCCGGgAugacgugguAGCCGCg -3' miRNA: 3'- gaaaCGGCCGUGA-UGGUUgU---------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 38351 | 0.77 | 0.222231 |
Target: 5'- ---gGCCGGCcugaugGCUACCAAUccccccuGGGCCGCu -3' miRNA: 3'- gaaaCGGCCG------UGAUGGUUG-------UUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 40959 | 0.77 | 0.222843 |
Target: 5'- ----cCCGGC-CUGCCAGgAGGCCGCc -3' miRNA: 3'- gaaacGGCCGuGAUGGUUgUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27509 | 0.76 | 0.24851 |
Target: 5'- ---aGUCGGCACUugaggccgGCCAGCAGcagaucGCCGCg -3' miRNA: 3'- gaaaCGGCCGUGA--------UGGUUGUU------CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 29694 | 0.76 | 0.24851 |
Target: 5'- uCUggGCgCGGCACccagcACCAACGGGCCGg -3' miRNA: 3'- -GAaaCG-GCCGUGa----UGGUUGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 4018 | 0.75 | 0.269328 |
Target: 5'- ---cGCCGGC-C-ACCAGCGucauGCCGCg -3' miRNA: 3'- gaaaCGGCCGuGaUGGUUGUu---CGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 27452 | 0.75 | 0.276573 |
Target: 5'- ---gGCCcuGGCGCUgguauGCCAGCGcGCCGCg -3' miRNA: 3'- gaaaCGG--CCGUGA-----UGGUUGUuCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 4805 | 0.75 | 0.279515 |
Target: 5'- ---gGCUGGCGCUGCgggauugcuggccggCGACAGGUCGCc -3' miRNA: 3'- gaaaCGGCCGUGAUG---------------GUUGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 8527 | 0.75 | 0.283973 |
Target: 5'- ---cGCCGGCGaacUUGCCcagguaucGCAGGCCGCg -3' miRNA: 3'- gaaaCGGCCGU---GAUGGu-------UGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 22829 | 0.75 | 0.291529 |
Target: 5'- aCUUcGCC-GCGCUGCCGAC-AGCCGa -3' miRNA: 3'- -GAAaCGGcCGUGAUGGUUGuUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 22226 | 0.75 | 0.294595 |
Target: 5'- ---cGCgGGCGCUGCCAagaccgagggcgacgACAaggcgaAGCCGCa -3' miRNA: 3'- gaaaCGgCCGUGAUGGU---------------UGU------UCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 11415 | 0.75 | 0.299242 |
Target: 5'- cCUcgGCCGGCAa-GCCcgugGACAGGUCGCg -3' miRNA: 3'- -GAaaCGGCCGUgaUGG----UUGUUCGGCG- -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 40059 | 0.74 | 0.307111 |
Target: 5'- ---cGCgGGCGuCUGCCAcguGCAGGCCGa -3' miRNA: 3'- gaaaCGgCCGU-GAUGGU---UGUUCGGCg -5' |
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26488 | 5' | -52.6 | NC_005357.1 | + | 30635 | 0.74 | 0.310302 |
Target: 5'- ---aGCCGGCGCgaaugagggcgcagACCAAUucgucGGGCCGCu -3' miRNA: 3'- gaaaCGGCCGUGa-------------UGGUUG-----UUCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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