miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 4293 0.67 0.733395
Target:  5'- --nUGUCGGCggugaACUgcACCAGCuuGCCGUu -3'
miRNA:   3'- gaaACGGCCG-----UGA--UGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 4320 0.67 0.68857
Target:  5'- -cUUGCCGGCGucauCCAguuGCGGGCUGg -3'
miRNA:   3'- gaAACGGCCGUgau-GGU---UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 4667 0.66 0.786831
Target:  5'- -gUUGuuGGCggGC-ACCAGCGcGCCGg -3'
miRNA:   3'- gaAACggCCG--UGaUGGUUGUuCGGCg -5'
26488 5' -52.6 NC_005357.1 + 4695 0.66 0.765894
Target:  5'- ---aGCgCGGCGagaaugGCCGGCAAGuuGUu -3'
miRNA:   3'- gaaaCG-GCCGUga----UGGUUGUUCggCG- -5'
26488 5' -52.6 NC_005357.1 + 4805 0.75 0.279515
Target:  5'- ---gGCUGGCGCUGCgggauugcuggccggCGACAGGUCGCc -3'
miRNA:   3'- gaaaCGGCCGUGAUG---------------GUUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 5014 0.72 0.403975
Target:  5'- -aUUGuuGGCAUUACCGACua-CUGCg -3'
miRNA:   3'- gaAACggCCGUGAUGGUUGuucGGCG- -5'
26488 5' -52.6 NC_005357.1 + 5037 0.67 0.722322
Target:  5'- --aUGCCccgcucgauGGCGucCUGCUugagcACAGGCCGCg -3'
miRNA:   3'- gaaACGG---------CCGU--GAUGGu----UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 5074 0.81 0.122567
Target:  5'- -gUUGUCGGCAUUGCCGACc-GCUGCa -3'
miRNA:   3'- gaAACGGCCGUGAUGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 5122 0.67 0.726763
Target:  5'- ---gGCUGGCGCcguugaacugcaacgUGCCGcGCAGGCgGCc -3'
miRNA:   3'- gaaaCGGCCGUG---------------AUGGU-UGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 5455 0.68 0.665751
Target:  5'- ---gGUCGGUAUcgACCAuCAcGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGa-UGGUuGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 7035 0.68 0.677184
Target:  5'- --gUGCCGcCugUugCAGCAGG-CGCa -3'
miRNA:   3'- gaaACGGCcGugAugGUUGUUCgGCG- -5'
26488 5' -52.6 NC_005357.1 + 7653 0.67 0.733395
Target:  5'- ---cGCCGGCuccUUGCCGuacACGcGCCGUu -3'
miRNA:   3'- gaaaCGGCCGu--GAUGGU---UGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 7707 0.68 0.677184
Target:  5'- ---gGCCGGC-UUGCCGAUGAaCUGCa -3'
miRNA:   3'- gaaaCGGCCGuGAUGGUUGUUcGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8295 0.67 0.699897
Target:  5'- --cUGCCGGgGCagugcaGCCAGCGGuGCgCGCu -3'
miRNA:   3'- gaaACGGCCgUGa-----UGGUUGUU-CG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 8456 0.69 0.585411
Target:  5'- --aUGUCGGCGuCgaggugGCCuGCGAuGCCGCa -3'
miRNA:   3'- gaaACGGCCGU-Ga-----UGGuUGUU-CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8527 0.75 0.283973
Target:  5'- ---cGCCGGCGaacUUGCCcagguaucGCAGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGU---GAUGGu-------UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8625 0.7 0.546916
Target:  5'- ---gGCCGGUACgcccuucggaaacGCCc-CAGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGa------------UGGuuGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8744 0.67 0.699897
Target:  5'- ---gGCgCGGCGCUACCGucaACAuggaauuuGCgCGCg -3'
miRNA:   3'- gaaaCG-GCCGUGAUGGU---UGUu-------CG-GCG- -5'
26488 5' -52.6 NC_005357.1 + 8808 0.7 0.525749
Target:  5'- ---cGCCGGuCAgUACCGaucugcugggucggGCcAGCCGCa -3'
miRNA:   3'- gaaaCGGCC-GUgAUGGU--------------UGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 8897 0.67 0.68857
Target:  5'- -aUUGUgaaUGGCGCUAUCGGC-GGCgCGCu -3'
miRNA:   3'- gaAACG---GCCGUGAUGGUUGuUCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.