Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26489 | 5' | -53.7 | NC_005357.1 | + | 25943 | 1 | 0.005442 |
Target: 5'- uGGACG-CAAUAUCGCGCCCGACCUGUc -3' miRNA: 3'- -CCUGCuGUUAUAGCGCGGGCUGGACA- -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 13218 | 0.78 | 0.176898 |
Target: 5'- uGGACGcCAugcgCGCGUCCGACCUGc -3' miRNA: 3'- -CCUGCuGUuauaGCGCGGGCUGGACa -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 13465 | 0.74 | 0.301381 |
Target: 5'- cGGGCG-CGGUGUCGgGCauGACCUGg -3' miRNA: 3'- -CCUGCuGUUAUAGCgCGggCUGGACa -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 32869 | 0.74 | 0.301381 |
Target: 5'- cGGCGcCGAgauUGUCGCGCCCGACUg-- -3' miRNA: 3'- cCUGCuGUU---AUAGCGCGGGCUGGaca -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 41640 | 0.73 | 0.367419 |
Target: 5'- uGACGGCGAUugCGCagcgGCCCGAUCUGa -3' miRNA: 3'- cCUGCUGUUAuaGCG----CGGGCUGGACa -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 34654 | 0.72 | 0.413467 |
Target: 5'- gGGugGACGccggcgcagAUCGCGCCgGugCUGc -3' miRNA: 3'- -CCugCUGUua-------UAGCGCGGgCugGACa -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 30987 | 0.72 | 0.413467 |
Target: 5'- cGGugGACGAUcugcUCaCGCgCGACCUGUc -3' miRNA: 3'- -CCugCUGUUAu---AGcGCGgGCUGGACA- -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 25164 | 0.72 | 0.423094 |
Target: 5'- uGGACGGCAAUAUC---CCCGGCUUGc -3' miRNA: 3'- -CCUGCUGUUAUAGcgcGGGCUGGACa -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 4367 | 0.72 | 0.426983 |
Target: 5'- cGGACGGCAggcggAUgcgcagccaggcgccGUCGCGCCgGGCCUu- -3' miRNA: 3'- -CCUGCUGU-----UA---------------UAGCGCGGgCUGGAca -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 15073 | 0.7 | 0.504591 |
Target: 5'- uGGACGagugcuGCGAgGUCG-GCCCGGCCUa- -3' miRNA: 3'- -CCUGC------UGUUaUAGCgCGGGCUGGAca -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 24659 | 0.7 | 0.526037 |
Target: 5'- aGGAUGGuguUGUCGCGCCCG-CCg-- -3' miRNA: 3'- -CCUGCUguuAUAGCGCGGGCuGGaca -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 39849 | 0.69 | 0.547818 |
Target: 5'- aGGGCGGCAAgcgcgcgcaCGCGCUgGGCCgUGUc -3' miRNA: 3'- -CCUGCUGUUaua------GCGCGGgCUGG-ACA- -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 14724 | 0.69 | 0.565443 |
Target: 5'- cGGCGGCGAgccgcugccgGCGCgCGGCCUGUa -3' miRNA: 3'- cCUGCUGUUauag------CGCGgGCUGGACA- -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 16258 | 0.69 | 0.569874 |
Target: 5'- cGGAUGGCGuUGgccUCGCGCgCGGCCa-- -3' miRNA: 3'- -CCUGCUGUuAU---AGCGCGgGCUGGaca -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 28791 | 0.69 | 0.580985 |
Target: 5'- uGGACGGC-----CGCGCCgGACUUGc -3' miRNA: 3'- -CCUGCUGuuauaGCGCGGgCUGGACa -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 35260 | 0.69 | 0.580985 |
Target: 5'- aGGGCGuCAg---CGCGUCgGGCCUGg -3' miRNA: 3'- -CCUGCuGUuauaGCGCGGgCUGGACa -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 10098 | 0.69 | 0.592141 |
Target: 5'- uGGGCGGCGGuUGUCGgGaCgCCGGCCUu- -3' miRNA: 3'- -CCUGCUGUU-AUAGCgC-G-GGCUGGAca -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 21461 | 0.69 | 0.592141 |
Target: 5'- gGGGCGGCAggAUGUUG-GCCuCGACCa-- -3' miRNA: 3'- -CCUGCUGU--UAUAGCgCGG-GCUGGaca -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 29403 | 0.68 | 0.603332 |
Target: 5'- cGAUGACGAggccGUCGCcacugcgcuGCgCGGCCUGUa -3' miRNA: 3'- cCUGCUGUUa---UAGCG---------CGgGCUGGACA- -5' |
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26489 | 5' | -53.7 | NC_005357.1 | + | 1112 | 0.68 | 0.614549 |
Target: 5'- -cGCGGC-AUGUCGCGCaUCGGCCcgGUg -3' miRNA: 3'- ccUGCUGuUAUAGCGCG-GGCUGGa-CA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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