miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26489 5' -53.7 NC_005357.1 + 1112 0.68 0.614549
Target:  5'- -cGCGGC-AUGUCGCGCaUCGGCCcgGUg -3'
miRNA:   3'- ccUGCUGuUAUAGCGCG-GGCUGGa-CA- -5'
26489 5' -53.7 NC_005357.1 + 2322 0.66 0.74729
Target:  5'- -aGCGACAGgcacagAUCGCGCagccuguccUCGAUCUGUu -3'
miRNA:   3'- ccUGCUGUUa-----UAGCGCG---------GGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 4367 0.72 0.426983
Target:  5'- cGGACGGCAggcggAUgcgcagccaggcgccGUCGCGCCgGGCCUu- -3'
miRNA:   3'- -CCUGCUGU-----UA---------------UAGCGCGGgCUGGAca -5'
26489 5' -53.7 NC_005357.1 + 8184 0.67 0.681819
Target:  5'- cGGAugcugcCGGCGAUuucAUCGCGCaCGGCCUcGUa -3'
miRNA:   3'- -CCU------GCUGUUA---UAGCGCGgGCUGGA-CA- -5'
26489 5' -53.7 NC_005357.1 + 8574 0.67 0.670664
Target:  5'- uGGGCGuCGuaggccgCGCGUgCGGCCUGg -3'
miRNA:   3'- -CCUGCuGUuaua---GCGCGgGCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 9563 0.66 0.757846
Target:  5'- gGGcGCGACAAUcUCG-GCgCCGACCg-- -3'
miRNA:   3'- -CC-UGCUGUUAuAGCgCG-GGCUGGaca -5'
26489 5' -53.7 NC_005357.1 + 10000 0.68 0.63702
Target:  5'- gGGuCGAaAGUGccgCGCGCCCGGCCc-- -3'
miRNA:   3'- -CCuGCUgUUAUa--GCGCGGGCUGGaca -5'
26489 5' -53.7 NC_005357.1 + 10098 0.69 0.592141
Target:  5'- uGGGCGGCGGuUGUCGgGaCgCCGGCCUu- -3'
miRNA:   3'- -CCUGCUGUU-AUAGCgC-G-GGCUGGAca -5'
26489 5' -53.7 NC_005357.1 + 12832 0.66 0.768269
Target:  5'- uGGACaacuGGCAAaccgcgcgccUGggCGCGgCCGACCUGa -3'
miRNA:   3'- -CCUG----CUGUU----------AUa-GCGCgGGCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 13218 0.78 0.176898
Target:  5'- uGGACGcCAugcgCGCGUCCGACCUGc -3'
miRNA:   3'- -CCUGCuGUuauaGCGCGGGCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 13465 0.74 0.301381
Target:  5'- cGGGCG-CGGUGUCGgGCauGACCUGg -3'
miRNA:   3'- -CCUGCuGUUAUAGCgCGggCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 14724 0.69 0.565443
Target:  5'- cGGCGGCGAgccgcugccgGCGCgCGGCCUGUa -3'
miRNA:   3'- cCUGCUGUUauag------CGCGgGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 14768 0.66 0.725823
Target:  5'- cGGugGAg---GUgGCGCCC-ACCUGg -3'
miRNA:   3'- -CCugCUguuaUAgCGCGGGcUGGACa -5'
26489 5' -53.7 NC_005357.1 + 15073 0.7 0.504591
Target:  5'- uGGACGagugcuGCGAgGUCG-GCCCGGCCUa- -3'
miRNA:   3'- -CCUGC------UGUUaUAGCgCGGGCUGGAca -5'
26489 5' -53.7 NC_005357.1 + 15162 0.66 0.74729
Target:  5'- aGGGCGACGgcugAUGUUGCuCCUGACaUGg -3'
miRNA:   3'- -CCUGCUGU----UAUAGCGcGGGCUGgACa -5'
26489 5' -53.7 NC_005357.1 + 16258 0.69 0.569874
Target:  5'- cGGAUGGCGuUGgccUCGCGCgCGGCCa-- -3'
miRNA:   3'- -CCUGCUGUuAU---AGCGCGgGCUGGaca -5'
26489 5' -53.7 NC_005357.1 + 17419 0.68 0.614549
Target:  5'- cGGACGGCAAcccgcUGUCGUcgGCCCccuuuGugCUGg -3'
miRNA:   3'- -CCUGCUGUU-----AUAGCG--CGGG-----CugGACa -5'
26489 5' -53.7 NC_005357.1 + 17854 0.66 0.757846
Target:  5'- cGGACGGCccgacCGUGgCCGGCCUc- -3'
miRNA:   3'- -CCUGCUGuuauaGCGCgGGCUGGAca -5'
26489 5' -53.7 NC_005357.1 + 18663 0.67 0.692923
Target:  5'- gGGGCGGuCGcc--CGCcCCCGGCCUGUu -3'
miRNA:   3'- -CCUGCU-GUuauaGCGcGGGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 18726 0.66 0.725823
Target:  5'- -cGCGACcugggCGCuaCCGGCCUGUa -3'
miRNA:   3'- ccUGCUGuuauaGCGcgGGCUGGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.