miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 3' -51.4 NC_005357.1 + 13427 0.71 0.615618
Target:  5'- -cUGGUCGCCuACGUCGA-UAACGAGGa -3'
miRNA:   3'- gcACUGGCGG-UGCAGCUuGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 14040 0.67 0.842442
Target:  5'- ---cGCCGCCgGCGUCGAACuggaacaccucgcCAAGGa -3'
miRNA:   3'- gcacUGGCGG-UGCAGCUUGuu-----------GUUCC- -5'
26490 3' -51.4 NC_005357.1 + 14477 0.72 0.548341
Target:  5'- aCGUGcUCGCCAUccccuacggGUCGGGCAGCAAcGGu -3'
miRNA:   3'- -GCACuGGCGGUG---------CAGCUUGUUGUU-CC- -5'
26490 3' -51.4 NC_005357.1 + 15711 0.67 0.847779
Target:  5'- --cGuCCGCCugGgcaUCGAACuggcGCGAGGc -3'
miRNA:   3'- gcaCuGGCGGugC---AGCUUGu---UGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 16066 0.69 0.727711
Target:  5'- aCGUGGCCGCCGCG-C--GCGGCGc-- -3'
miRNA:   3'- -GCACUGGCGGUGCaGcuUGUUGUucc -5'
26490 3' -51.4 NC_005357.1 + 17168 0.75 0.403382
Target:  5'- aGUGACCGagcaGCG-CGAGCAACAGGu -3'
miRNA:   3'- gCACUGGCgg--UGCaGCUUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 17548 0.7 0.69459
Target:  5'- gCGUGACCGauaacccguaCUACGUCG-AUAGCGGGu -3'
miRNA:   3'- -GCACUGGC----------GGUGCAGCuUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 18402 0.74 0.452528
Target:  5'- gGUGGCgGCCACGUCG-GCGA--AGGu -3'
miRNA:   3'- gCACUGgCGGUGCAGCuUGUUguUCC- -5'
26490 3' -51.4 NC_005357.1 + 19048 0.69 0.738565
Target:  5'- --cGGCCGCCggcgGCGUCGAuCAGCGuguccucgccgAGGu -3'
miRNA:   3'- gcaCUGGCGG----UGCAGCUuGUUGU-----------UCC- -5'
26490 3' -51.4 NC_005357.1 + 19184 0.66 0.864934
Target:  5'- cCGUG-CCGCCGgCGUCGAugAuguucuGGc -3'
miRNA:   3'- -GCACuGGCGGU-GCAGCUugUuguu--CC- -5'
26490 3' -51.4 NC_005357.1 + 19245 0.66 0.864934
Target:  5'- --cGACCuGCUGCuGUCGcacCAGCAGGGg -3'
miRNA:   3'- gcaCUGG-CGGUG-CAGCuu-GUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 19331 0.66 0.873131
Target:  5'- cCGUGGgCGCCGCcGUUG-GCGuCGGGGc -3'
miRNA:   3'- -GCACUgGCGGUG-CAGCuUGUuGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 20848 0.74 0.461718
Target:  5'- -aUGACCGCCACcgaagugGcCGAGCGGCAcgAGGa -3'
miRNA:   3'- gcACUGGCGGUG-------CaGCUUGUUGU--UCC- -5'
26490 3' -51.4 NC_005357.1 + 22420 0.66 0.888724
Target:  5'- --aGGCgCGCCAUGcCGAGCAaguugGCGAGu -3'
miRNA:   3'- gcaCUG-GCGGUGCaGCUUGU-----UGUUCc -5'
26490 3' -51.4 NC_005357.1 + 22670 0.67 0.847779
Target:  5'- --aGACCGCCuCGUgGccGGCAACAAcGGc -3'
miRNA:   3'- gcaCUGGCGGuGCAgC--UUGUUGUU-CC- -5'
26490 3' -51.4 NC_005357.1 + 24037 0.78 0.250026
Target:  5'- aCGUGGCCGCCACcggCGccauCGGCAAGGc -3'
miRNA:   3'- -GCACUGGCGGUGca-GCuu--GUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 25694 1.12 0.001354
Target:  5'- gCGUGACCGCCACGUCGAACAACAAGGg -3'
miRNA:   3'- -GCACUGGCGGUGCAGCUUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 28112 0.72 0.563882
Target:  5'- gGUGAUcguggucacgcgguaCGCCugGUCGGGCGGCAGc- -3'
miRNA:   3'- gCACUG---------------GCGGugCAGCUUGUUGUUcc -5'
26490 3' -51.4 NC_005357.1 + 28338 0.68 0.770398
Target:  5'- uCGaUGGCCuugGCCuCGUCGGGCAGCGcgcGGa -3'
miRNA:   3'- -GC-ACUGG---CGGuGCAGCUUGUUGUu--CC- -5'
26490 3' -51.4 NC_005357.1 + 28686 0.72 0.537323
Target:  5'- gCGcGGCgCGCCACGUCGuuC-ACAAGGu -3'
miRNA:   3'- -GCaCUG-GCGGUGCAGCuuGuUGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.