miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 3' -51.4 NC_005357.1 + 336 0.68 0.770398
Target:  5'- -cUGGCgGUgGCGUCGcGCAGCAGGc -3'
miRNA:   3'- gcACUGgCGgUGCAGCuUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 1004 0.71 0.581781
Target:  5'- cCGUGguucACCGCaGCGUCGAACAccuGgAAGGc -3'
miRNA:   3'- -GCAC----UGGCGgUGCAGCUUGU---UgUUCC- -5'
26490 3' -51.4 NC_005357.1 + 1587 0.66 0.872323
Target:  5'- aGUGGCCGCCGCcuuccuggugGUCGAguGCGuugguuuGCGuGGu -3'
miRNA:   3'- gCACUGGCGGUG----------CAGCU--UGU-------UGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 1879 0.71 0.614486
Target:  5'- cCGUGGCCggcgcugGCCGgGUgggCGAACAGCAgcGGGa -3'
miRNA:   3'- -GCACUGG-------CGGUgCA---GCUUGUUGU--UCC- -5'
26490 3' -51.4 NC_005357.1 + 2041 0.67 0.820273
Target:  5'- --cGGCCGCCucgGCGaCGAugGAuuCAAGGg -3'
miRNA:   3'- gcaCUGGCGG---UGCaGCUugUU--GUUCC- -5'
26490 3' -51.4 NC_005357.1 + 4040 0.68 0.780723
Target:  5'- ---aGCCgGCCGCGgCGAGCGGCAGGc -3'
miRNA:   3'- gcacUGG-CGGUGCaGCUUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 5319 0.66 0.856481
Target:  5'- cCGUaGGCCGCgagCACGUgGcGCAGCAuGGc -3'
miRNA:   3'- -GCA-CUGGCG---GUGCAgCuUGUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 5595 0.67 0.824055
Target:  5'- cCGUGucgauguCCGCCucguugguagccacgGCGUCGAuguUGGCGAGGu -3'
miRNA:   3'- -GCACu------GGCGG---------------UGCAGCUu--GUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 5742 0.69 0.716755
Target:  5'- --aGAUCGCCcagcGCGcCGGGCAGCGAGu -3'
miRNA:   3'- gcaCUGGCGG----UGCaGCUUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 6740 0.66 0.881063
Target:  5'- --gGGCCGCCGCGcUC-AAUAGCGgaaAGGu -3'
miRNA:   3'- gcaCUGGCGGUGC-AGcUUGUUGU---UCC- -5'
26490 3' -51.4 NC_005357.1 + 6797 0.71 0.615618
Target:  5'- -aUGACCGCCugGUC-AGC--CAGGGa -3'
miRNA:   3'- gcACUGGCGGugCAGcUUGuuGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 7583 0.66 0.881063
Target:  5'- aGUaGCCGCCGCGUaGggU--CAGGGu -3'
miRNA:   3'- gCAcUGGCGGUGCAgCuuGuuGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 8398 0.69 0.749306
Target:  5'- ---cGCCGCCcacgUGUCGGGCAGCGAGc -3'
miRNA:   3'- gcacUGGCGGu---GCAGCUUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 9319 0.67 0.810672
Target:  5'- -cUGGCgGCgCACGUCGGcGCGGCGGGcGg -3'
miRNA:   3'- gcACUGgCG-GUGCAGCU-UGUUGUUC-C- -5'
26490 3' -51.4 NC_005357.1 + 9349 0.71 0.615618
Target:  5'- uGUaGGCCGCCGCGUCGcugcGCGACc--- -3'
miRNA:   3'- gCA-CUGGCGGUGCAGCu---UGUUGuucc -5'
26490 3' -51.4 NC_005357.1 + 9812 0.66 0.881063
Target:  5'- --cGACCGCgGCGUCGcGGCccuuGACGcGGg -3'
miRNA:   3'- gcaCUGGCGgUGCAGC-UUG----UUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 11155 0.67 0.820273
Target:  5'- ---cGCUGCCACGUCGGGguCAACGAa- -3'
miRNA:   3'- gcacUGGCGGUGCAGCUU--GUUGUUcc -5'
26490 3' -51.4 NC_005357.1 + 11220 0.7 0.67217
Target:  5'- -aUGACCGCCACGUucccgcccaCGcccacuagcguGGCGAUGAGGg -3'
miRNA:   3'- gcACUGGCGGUGCA---------GC-----------UUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 11996 0.66 0.856481
Target:  5'- -uUGGCCuuuuCCACGUCGGccaGCAGCGcGGc -3'
miRNA:   3'- gcACUGGc---GGUGCAGCU---UGUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 13111 0.66 0.873131
Target:  5'- --cGACCGCCACcgccUUGAaguGCuggGCAAGGg -3'
miRNA:   3'- gcaCUGGCGGUGc---AGCU---UGu--UGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.