miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 3' -51.4 NC_005357.1 + 19184 0.66 0.864934
Target:  5'- cCGUG-CCGCCGgCGUCGAugAuguucuGGc -3'
miRNA:   3'- -GCACuGGCGGU-GCAGCUugUuguu--CC- -5'
26490 3' -51.4 NC_005357.1 + 28338 0.68 0.770398
Target:  5'- uCGaUGGCCuugGCCuCGUCGGGCAGCGcgcGGa -3'
miRNA:   3'- -GC-ACUGG---CGGuGCAGCUUGUUGUu--CC- -5'
26490 3' -51.4 NC_005357.1 + 336 0.68 0.770398
Target:  5'- -cUGGCgGUgGCGUCGcGCAGCAGGc -3'
miRNA:   3'- gcACUGgCGgUGCAGCuUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 34275 0.68 0.800872
Target:  5'- --gGGCCGCaucauCGaggUGAACGGCAAGGg -3'
miRNA:   3'- gcaCUGGCGgu---GCa--GCUUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 9319 0.67 0.810672
Target:  5'- -cUGGCgGCgCACGUCGGcGCGGCGGGcGg -3'
miRNA:   3'- gcACUGgCG-GUGCAGCU-UGUUGUUC-C- -5'
26490 3' -51.4 NC_005357.1 + 5595 0.67 0.824055
Target:  5'- cCGUGucgauguCCGCCucguugguagccacgGCGUCGAuguUGGCGAGGu -3'
miRNA:   3'- -GCACu------GGCGG---------------UGCAGCUu--GUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 39679 0.67 0.847779
Target:  5'- aGUGGUCGgCACGccCGAGCAGCGccGGGc -3'
miRNA:   3'- gCACUGGCgGUGCa-GCUUGUUGU--UCC- -5'
26490 3' -51.4 NC_005357.1 + 15711 0.67 0.847779
Target:  5'- --cGuCCGCCugGgcaUCGAACuggcGCGAGGc -3'
miRNA:   3'- gcaCuGGCGGugC---AGCUUGu---UGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 11996 0.66 0.856481
Target:  5'- -uUGGCCuuuuCCACGUCGGccaGCAGCGcGGc -3'
miRNA:   3'- gcACUGGc---GGUGCAGCU---UGUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 29201 0.69 0.749306
Target:  5'- -aUGACCGgCAgGUCGGACGcgcGCAuGGc -3'
miRNA:   3'- gcACUGGCgGUgCAGCUUGU---UGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 19048 0.69 0.738565
Target:  5'- --cGGCCGCCggcgGCGUCGAuCAGCGuguccucgccgAGGu -3'
miRNA:   3'- gcaCUGGCGG----UGCAGCUuGUUGU-----------UCC- -5'
26490 3' -51.4 NC_005357.1 + 16066 0.69 0.727711
Target:  5'- aCGUGGCCGCCGCG-C--GCGGCGc-- -3'
miRNA:   3'- -GCACUGGCGGUGCaGcuUGUUGUucc -5'
26490 3' -51.4 NC_005357.1 + 34228 0.74 0.452528
Target:  5'- -cUGGCCGCCAUGUCGcuGACGAacGGGc -3'
miRNA:   3'- gcACUGGCGGUGCAGC--UUGUUguUCC- -5'
26490 3' -51.4 NC_005357.1 + 39336 0.73 0.473083
Target:  5'- gGUGGuuGCCGCGugUCGAAgGGCAuGGg -3'
miRNA:   3'- gCACUggCGGUGC--AGCUUgUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 28686 0.72 0.537323
Target:  5'- gCGcGGCgCGCCACGUCGuuC-ACAAGGu -3'
miRNA:   3'- -GCaCUG-GCGGUGCAGCuuGuUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 28112 0.72 0.563882
Target:  5'- gGUGAUcguggucacgcgguaCGCCugGUCGGGCGGCAGc- -3'
miRNA:   3'- gCACUG---------------GCGGugCAGCUUGUUGUUcc -5'
26490 3' -51.4 NC_005357.1 + 1004 0.71 0.581781
Target:  5'- cCGUGguucACCGCaGCGUCGAACAccuGgAAGGc -3'
miRNA:   3'- -GCAC----UGGCGgUGCAGCUUGU---UgUUCC- -5'
26490 3' -51.4 NC_005357.1 + 35058 0.71 0.615618
Target:  5'- gGUGcCCGCCGCuggaCGAACGACGccgAGGu -3'
miRNA:   3'- gCACuGGCGGUGca--GCUUGUUGU---UCC- -5'
26490 3' -51.4 NC_005357.1 + 6797 0.71 0.615618
Target:  5'- -aUGACCGCCugGUC-AGC--CAGGGa -3'
miRNA:   3'- gcACUGGCGGugCAGcUUGuuGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 11220 0.7 0.67217
Target:  5'- -aUGACCGCCACGUucccgcccaCGcccacuagcguGGCGAUGAGGg -3'
miRNA:   3'- gcACUGGCGGUGCA---------GC-----------UUGUUGUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.