miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 3' -51.4 NC_005357.1 + 25694 1.12 0.001354
Target:  5'- gCGUGACCGCCACGUCGAACAACAAGGg -3'
miRNA:   3'- -GCACUGGCGGUGCAGCUUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 24037 0.78 0.250026
Target:  5'- aCGUGGCCGCCACcggCGccauCGGCAAGGc -3'
miRNA:   3'- -GCACUGGCGGUGca-GCuu--GUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 17168 0.75 0.403382
Target:  5'- aGUGACCGagcaGCG-CGAGCAACAGGu -3'
miRNA:   3'- gCACUGGCgg--UGCaGCUUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 18402 0.74 0.452528
Target:  5'- gGUGGCgGCCACGUCG-GCGA--AGGu -3'
miRNA:   3'- gCACUGgCGGUGCAGCuUGUUguUCC- -5'
26490 3' -51.4 NC_005357.1 + 34228 0.74 0.452528
Target:  5'- -cUGGCCGCCAUGUCGcuGACGAacGGGc -3'
miRNA:   3'- gcACUGGCGGUGCAGC--UUGUUguUCC- -5'
26490 3' -51.4 NC_005357.1 + 20848 0.74 0.461718
Target:  5'- -aUGACCGCCACcgaagugGcCGAGCGGCAcgAGGa -3'
miRNA:   3'- gcACUGGCGGUG-------CaGCUUGUUGU--UCC- -5'
26490 3' -51.4 NC_005357.1 + 39336 0.73 0.473083
Target:  5'- gGUGGuuGCCGCGugUCGAAgGGCAuGGg -3'
miRNA:   3'- gCACUggCGGUGC--AGCUUgUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 28686 0.72 0.537323
Target:  5'- gCGcGGCgCGCCACGUCGuuC-ACAAGGu -3'
miRNA:   3'- -GCaCUG-GCGGUGCAGCuuGuUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 14477 0.72 0.548341
Target:  5'- aCGUGcUCGCCAUccccuacggGUCGGGCAGCAAcGGu -3'
miRNA:   3'- -GCACuGGCGGUG---------CAGCUUGUUGUU-CC- -5'
26490 3' -51.4 NC_005357.1 + 28112 0.72 0.563882
Target:  5'- gGUGAUcguggucacgcgguaCGCCugGUCGGGCGGCAGc- -3'
miRNA:   3'- gCACUG---------------GCGGugCAGCUUGUUGUUcc -5'
26490 3' -51.4 NC_005357.1 + 1004 0.71 0.581781
Target:  5'- cCGUGguucACCGCaGCGUCGAACAccuGgAAGGc -3'
miRNA:   3'- -GCAC----UGGCGgUGCAGCUUGU---UgUUCC- -5'
26490 3' -51.4 NC_005357.1 + 41280 0.71 0.593028
Target:  5'- gCGUGACCGCCGcCGUagcgCGAGCuAACGGu- -3'
miRNA:   3'- -GCACUGGCGGU-GCA----GCUUG-UUGUUcc -5'
26490 3' -51.4 NC_005357.1 + 1879 0.71 0.614486
Target:  5'- cCGUGGCCggcgcugGCCGgGUgggCGAACAGCAgcGGGa -3'
miRNA:   3'- -GCACUGG-------CGGUgCA---GCUUGUUGU--UCC- -5'
26490 3' -51.4 NC_005357.1 + 13427 0.71 0.615618
Target:  5'- -cUGGUCGCCuACGUCGA-UAACGAGGa -3'
miRNA:   3'- gcACUGGCGG-UGCAGCUuGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 9349 0.71 0.615618
Target:  5'- uGUaGGCCGCCGCGUCGcugcGCGACc--- -3'
miRNA:   3'- gCA-CUGGCGGUGCAGCu---UGUUGuucc -5'
26490 3' -51.4 NC_005357.1 + 32648 0.71 0.615618
Target:  5'- gCGcGACCugGCCGCGUgGAACGAUcuGGa -3'
miRNA:   3'- -GCaCUGG--CGGUGCAgCUUGUUGuuCC- -5'
26490 3' -51.4 NC_005357.1 + 6797 0.71 0.615618
Target:  5'- -aUGACCGCCugGUC-AGC--CAGGGa -3'
miRNA:   3'- gcACUGGCGGugCAGcUUGuuGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 35058 0.71 0.615618
Target:  5'- gGUGcCCGCCGCuggaCGAACGACGccgAGGu -3'
miRNA:   3'- gCACuGGCGGUGca--GCUUGUUGU---UCC- -5'
26490 3' -51.4 NC_005357.1 + 11220 0.7 0.67217
Target:  5'- -aUGACCGCCACGUucccgcccaCGcccacuagcguGGCGAUGAGGg -3'
miRNA:   3'- gcACUGGCGGUGCA---------GC-----------UUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 17548 0.7 0.69459
Target:  5'- gCGUGACCGauaacccguaCUACGUCG-AUAGCGGGu -3'
miRNA:   3'- -GCACUGGC----------GGUGCAGCuUGUUGUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.