miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 5' -57.4 NC_005357.1 + 18384 0.68 0.405704
Target:  5'- gGCCuUGCCGaugGCGccGGUgGCGGCCa -3'
miRNA:   3'- gUGG-AUGGCga-UGCa-CCAgUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 18442 0.67 0.504094
Target:  5'- -uCCUgcACCGaaaACGUgacGGUCGCGGCgCCg -3'
miRNA:   3'- guGGA--UGGCga-UGCA---CCAGUGCCG-GG- -5'
26490 5' -57.4 NC_005357.1 + 18735 0.67 0.483524
Target:  5'- gGCgCUACCgGCcugUACGU-GUC-CGGCCCg -3'
miRNA:   3'- gUG-GAUGG-CG---AUGCAcCAGuGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 19490 0.66 0.546297
Target:  5'- uGCCggugggcagGCCGCUGCGaaccgUGGUCuuGuGCUCg -3'
miRNA:   3'- gUGGa--------UGGCGAUGC-----ACCAGugC-CGGG- -5'
26490 5' -57.4 NC_005357.1 + 20663 0.72 0.236511
Target:  5'- gCACCgUGCCGggcggccugucCUAUGUGGaCGCGGCCg -3'
miRNA:   3'- -GUGG-AUGGC-----------GAUGCACCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 22787 0.67 0.483524
Target:  5'- cCACCaACCcgacGCUGgcCGauGUCGCGGCCCg -3'
miRNA:   3'- -GUGGaUGG----CGAU--GCacCAGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 23012 0.67 0.463365
Target:  5'- gGCCUGCUGCUGCGccUGcugUugGGCUUg -3'
miRNA:   3'- gUGGAUGGCGAUGC--ACca-GugCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 23354 0.66 0.557032
Target:  5'- gGCCUcGCCGCcgAUGaacacGGUgGCGuGCCCg -3'
miRNA:   3'- gUGGA-UGGCGa-UGCa----CCAgUGC-CGGG- -5'
26490 5' -57.4 NC_005357.1 + 24718 0.68 0.443655
Target:  5'- aGCUUGCCGCgAUG-GGcauuUCcCGGCCCg -3'
miRNA:   3'- gUGGAUGGCGaUGCaCC----AGuGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 25307 0.8 0.066081
Target:  5'- cCAUCUGCCGCaacuuCGUGGUCAagccccaaGGCCCg -3'
miRNA:   3'- -GUGGAUGGCGau---GCACCAGUg-------CCGGG- -5'
26490 5' -57.4 NC_005357.1 + 25730 1.11 0.000327
Target:  5'- aCACCUACCGCUACGUGGUCACGGCCCu -3'
miRNA:   3'- -GUGGAUGGCGAUGCACCAGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 28273 0.66 0.567826
Target:  5'- gCACCaugACCGC-GCGcugGGaCACGGCgCa -3'
miRNA:   3'- -GUGGa--UGGCGaUGCa--CCaGUGCCGgG- -5'
26490 5' -57.4 NC_005357.1 + 28586 0.66 0.514521
Target:  5'- gGCC-ACCgGCaGCGUGGUguCGGUCa -3'
miRNA:   3'- gUGGaUGG-CGaUGCACCAguGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 29042 0.71 0.262197
Target:  5'- cCGCCUacaACCGC-GCGcUGGgCAUGGCCUa -3'
miRNA:   3'- -GUGGA---UGGCGaUGC-ACCaGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 31299 0.66 0.525035
Target:  5'- aGCCUGgCGaCcGCGUGGU---GGCCCg -3'
miRNA:   3'- gUGGAUgGC-GaUGCACCAgugCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 31500 0.71 0.27587
Target:  5'- aUACCuUGCCGCcgGCGUGcugCugGGCCUc -3'
miRNA:   3'- -GUGG-AUGGCGa-UGCACca-GugCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 31611 0.76 0.126653
Target:  5'- cUACCUGCUGCUuuacgcaGCGUGG-CAgGGCCUc -3'
miRNA:   3'- -GUGGAUGGCGA-------UGCACCaGUgCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 31650 0.76 0.13427
Target:  5'- aUACCgUGCCGCUugGUGGgccuaCAcCGGCCa -3'
miRNA:   3'- -GUGG-AUGGCGAugCACCa----GU-GCCGGg -5'
26490 5' -57.4 NC_005357.1 + 32463 0.69 0.361244
Target:  5'- -cCCUACUGCcgAgGUGGggGCGGCCg -3'
miRNA:   3'- guGGAUGGCGa-UgCACCagUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 33201 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.