miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 5' -57.4 NC_005357.1 + 1140 0.66 0.557032
Target:  5'- aACCguuagcuCgCGCUACGgcggcGGUCACGcCCCa -3'
miRNA:   3'- gUGGau-----G-GCGAUGCa----CCAGUGCcGGG- -5'
26490 5' -57.4 NC_005357.1 + 1988 0.66 0.514521
Target:  5'- cCACCUGCCGUgGC-UGaUCuugaGGCCCa -3'
miRNA:   3'- -GUGGAUGGCGaUGcACcAGug--CCGGG- -5'
26490 5' -57.4 NC_005357.1 + 2069 0.7 0.320291
Target:  5'- gGCCUGuaGCUugacauCGUGGaCAuCGGCCCa -3'
miRNA:   3'- gUGGAUggCGAu-----GCACCaGU-GCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 4040 0.69 0.378615
Target:  5'- aGCCgGCCGCggcgaGCGgcaGGcCAgCGGCCCa -3'
miRNA:   3'- gUGGaUGGCGa----UGCa--CCaGU-GCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 4162 0.71 0.282917
Target:  5'- cCACCUugCGCgcCGUGGUCGaGGUguagCCa -3'
miRNA:   3'- -GUGGAugGCGauGCACCAGUgCCG----GG- -5'
26490 5' -57.4 NC_005357.1 + 5317 0.66 0.514521
Target:  5'- gGCCguagGCCGCgagcACGUGGcgcagCAUGGCa- -3'
miRNA:   3'- gUGGa---UGGCGa---UGCACCa----GUGCCGgg -5'
26490 5' -57.4 NC_005357.1 + 6188 0.66 0.525035
Target:  5'- -uCUUGCCGCaGCGUuugcaGGUgACGGCgCg -3'
miRNA:   3'- guGGAUGGCGaUGCA-----CCAgUGCCGgG- -5'
26490 5' -57.4 NC_005357.1 + 6396 0.67 0.453452
Target:  5'- gGCCgGCCgGCccgGUGuaGUCGCGGCCCa -3'
miRNA:   3'- gUGGaUGG-CGaugCAC--CAGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 7539 0.66 0.567826
Target:  5'- -uUCUuCCGC-ACGcUGGcUCGCGGCCg -3'
miRNA:   3'- guGGAuGGCGaUGC-ACC-AGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 8621 0.73 0.196658
Target:  5'- gCGCUUcucgGCCGCUGCGguggcgaGGUCGcCGGCCUu -3'
miRNA:   3'- -GUGGA----UGGCGAUGCa------CCAGU-GCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 10799 0.67 0.463365
Target:  5'- gCAUgUACUGCUGCGccucGG-CGCGGCUg -3'
miRNA:   3'- -GUGgAUGGCGAUGCa---CCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 13557 0.66 0.525035
Target:  5'- aCGCCaGCaGCgaggACGUGG-CGCGGCgCu -3'
miRNA:   3'- -GUGGaUGgCGa---UGCACCaGUGCCGgG- -5'
26490 5' -57.4 NC_005357.1 + 14191 0.68 0.405704
Target:  5'- aGCCUGgcgcaguccgacCCGC-GCGUGGUCGuCGGCg- -3'
miRNA:   3'- gUGGAU------------GGCGaUGCACCAGU-GCCGgg -5'
26490 5' -57.4 NC_005357.1 + 14250 0.7 0.344435
Target:  5'- gCACCUGCUGg-GCGUGGgcaACGGCg- -3'
miRNA:   3'- -GUGGAUGGCgaUGCACCag-UGCCGgg -5'
26490 5' -57.4 NC_005357.1 + 14272 0.66 0.525035
Target:  5'- gGCCUGCUGCaccaUGCuGUcGGcgaUGCGGCCCa -3'
miRNA:   3'- gUGGAUGGCG----AUG-CA-CCa--GUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 14728 0.7 0.31253
Target:  5'- gGCgaGCCGCUGCc-GGcgCGCGGCCUg -3'
miRNA:   3'- gUGgaUGGCGAUGcaCCa-GUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 16078 0.67 0.49376
Target:  5'- aAUCUGCCGaUACGagcGG-CGCGGCCa -3'
miRNA:   3'- gUGGAUGGCgAUGCa--CCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 17346 0.68 0.424426
Target:  5'- gCGCCggGCgCGCUGCGcugGGUgGCGaugcuGCCCg -3'
miRNA:   3'- -GUGGa-UG-GCGAUGCa--CCAgUGC-----CGGG- -5'
26490 5' -57.4 NC_005357.1 + 17694 0.67 0.47339
Target:  5'- -gUCgagGCCGCgcagGCGcGGUggaaGCGGCCCg -3'
miRNA:   3'- guGGa--UGGCGa---UGCaCCAg---UGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 18137 0.77 0.120108
Target:  5'- gACCUcACCGCccccACGUGGUCACuGUCCg -3'
miRNA:   3'- gUGGA-UGGCGa---UGCACCAGUGcCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.