Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 10799 | 0.67 | 0.463365 |
Target: 5'- gCAUgUACUGCUGCGccucGG-CGCGGCUg -3' miRNA: 3'- -GUGgAUGGCGAUGCa---CCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 18384 | 0.68 | 0.405704 |
Target: 5'- gGCCuUGCCGaugGCGccGGUgGCGGCCa -3' miRNA: 3'- gUGG-AUGGCga-UGCa-CCAgUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 6396 | 0.67 | 0.453452 |
Target: 5'- gGCCgGCCgGCccgGUGuaGUCGCGGCCCa -3' miRNA: 3'- gUGGaUGG-CGaugCAC--CAGUGCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 33201 | 0.67 | 0.463365 |
Target: 5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3' miRNA: 3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 33249 | 0.67 | 0.463365 |
Target: 5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3' miRNA: 3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 33297 | 0.67 | 0.463365 |
Target: 5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3' miRNA: 3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 33345 | 0.67 | 0.463365 |
Target: 5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3' miRNA: 3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 33393 | 0.67 | 0.463365 |
Target: 5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3' miRNA: 3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 33465 | 0.67 | 0.463365 |
Target: 5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3' miRNA: 3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 41045 | 0.68 | 0.396539 |
Target: 5'- aACCgUugUGC-GCGUGGcCGCGGCgCCc -3' miRNA: 3'- gUGG-AugGCGaUGCACCaGUGCCG-GG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 38388 | 0.69 | 0.361244 |
Target: 5'- gGCCUGCCGCU-CGc---CGCGGCCg -3' miRNA: 3'- gUGGAUGGCGAuGCaccaGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 32463 | 0.69 | 0.361244 |
Target: 5'- -cCCUACUGCcgAgGUGGggGCGGCCg -3' miRNA: 3'- guGGAUGGCGa-UgCACCagUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 31650 | 0.76 | 0.13427 |
Target: 5'- aUACCgUGCCGCUugGUGGgccuaCAcCGGCCa -3' miRNA: 3'- -GUGG-AUGGCGAugCACCa----GU-GCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 38219 | 0.75 | 0.158409 |
Target: 5'- aGCCgcaaGCCGCgACGUGcUCGCGGCCa -3' miRNA: 3'- gUGGa---UGGCGaUGCACcAGUGCCGGg -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 37101 | 0.74 | 0.176615 |
Target: 5'- uGCCaUGCUGCgccACGUGcUCGCGGCCUa -3' miRNA: 3'- gUGG-AUGGCGa--UGCACcAGUGCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 8621 | 0.73 | 0.196658 |
Target: 5'- gCGCUUcucgGCCGCUGCGguggcgaGGUCGcCGGCCUu -3' miRNA: 3'- -GUGGA----UGGCGAUGCa------CCAGU-GCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 36640 | 0.73 | 0.20197 |
Target: 5'- gGCgCUGCCGCgaugGCGggacacgaUGGUCAaGGCCCu -3' miRNA: 3'- gUG-GAUGGCGa---UGC--------ACCAGUgCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 31500 | 0.71 | 0.27587 |
Target: 5'- aUACCuUGCCGCcgGCGUGcugCugGGCCUc -3' miRNA: 3'- -GUGG-AUGGCGa-UGCACca-GugCCGGG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 4162 | 0.71 | 0.282917 |
Target: 5'- cCACCUugCGCgcCGUGGUCGaGGUguagCCa -3' miRNA: 3'- -GUGGAugGCGauGCACCAGUgCCG----GG- -5' |
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26490 | 5' | -57.4 | NC_005357.1 | + | 39594 | 0.71 | 0.290106 |
Target: 5'- uGCUggcGCCGCUgcGCGUGGcCGCgagcaccuGGCCCg -3' miRNA: 3'- gUGGa--UGGCGA--UGCACCaGUG--------CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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