miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 5' -57.4 NC_005357.1 + 25730 1.11 0.000327
Target:  5'- aCACCUACCGCUACGUGGUCACGGCCCu -3'
miRNA:   3'- -GUGGAUGGCGAUGCACCAGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 25307 0.8 0.066081
Target:  5'- cCAUCUGCCGCaacuuCGUGGUCAagccccaaGGCCCg -3'
miRNA:   3'- -GUGGAUGGCGau---GCACCAGUg-------CCGGG- -5'
26490 5' -57.4 NC_005357.1 + 18137 0.77 0.120108
Target:  5'- gACCUcACCGCccccACGUGGUCACuGUCCg -3'
miRNA:   3'- gUGGA-UGGCGa---UGCACCAGUGcCGGG- -5'
26490 5' -57.4 NC_005357.1 + 31611 0.76 0.126653
Target:  5'- cUACCUGCUGCUuuacgcaGCGUGG-CAgGGCCUc -3'
miRNA:   3'- -GUGGAUGGCGA-------UGCACCaGUgCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 31650 0.76 0.13427
Target:  5'- aUACCgUGCCGCUugGUGGgccuaCAcCGGCCa -3'
miRNA:   3'- -GUGG-AUGGCGAugCACCa----GU-GCCGGg -5'
26490 5' -57.4 NC_005357.1 + 38219 0.75 0.158409
Target:  5'- aGCCgcaaGCCGCgACGUGcUCGCGGCCa -3'
miRNA:   3'- gUGGa---UGGCGaUGCACcAGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 37101 0.74 0.176615
Target:  5'- uGCCaUGCUGCgccACGUGcUCGCGGCCUa -3'
miRNA:   3'- gUGG-AUGGCGa--UGCACcAGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 8621 0.73 0.196658
Target:  5'- gCGCUUcucgGCCGCUGCGguggcgaGGUCGcCGGCCUu -3'
miRNA:   3'- -GUGGA----UGGCGAUGCa------CCAGU-GCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 36640 0.73 0.20197
Target:  5'- gGCgCUGCCGCgaugGCGggacacgaUGGUCAaGGCCCu -3'
miRNA:   3'- gUG-GAUGGCGa---UGC--------ACCAGUgCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 20663 0.72 0.236511
Target:  5'- gCACCgUGCCGggcggccugucCUAUGUGGaCGCGGCCg -3'
miRNA:   3'- -GUGG-AUGGC-----------GAUGCACCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 29042 0.71 0.262197
Target:  5'- cCGCCUacaACCGC-GCGcUGGgCAUGGCCUa -3'
miRNA:   3'- -GUGGA---UGGCGaUGC-ACCaGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 31500 0.71 0.27587
Target:  5'- aUACCuUGCCGCcgGCGUGcugCugGGCCUc -3'
miRNA:   3'- -GUGG-AUGGCGa-UGCACca-GugCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 4162 0.71 0.282917
Target:  5'- cCACCUugCGCgcCGUGGUCGaGGUguagCCa -3'
miRNA:   3'- -GUGGAugGCGauGCACCAGUgCCG----GG- -5'
26490 5' -57.4 NC_005357.1 + 39594 0.71 0.290106
Target:  5'- uGCUggcGCCGCUgcGCGUGGcCGCgagcaccuGGCCCg -3'
miRNA:   3'- gUGGa--UGGCGA--UGCACCaGUG--------CCGGG- -5'
26490 5' -57.4 NC_005357.1 + 14728 0.7 0.31253
Target:  5'- gGCgaGCCGCUGCc-GGcgCGCGGCCUg -3'
miRNA:   3'- gUGgaUGGCGAUGcaCCa-GUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 2069 0.7 0.320291
Target:  5'- gGCCUGuaGCUugacauCGUGGaCAuCGGCCCa -3'
miRNA:   3'- gUGGAUggCGAu-----GCACCaGU-GCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 14250 0.7 0.344435
Target:  5'- gCACCUGCUGg-GCGUGGgcaACGGCg- -3'
miRNA:   3'- -GUGGAUGGCgaUGCACCag-UGCCGgg -5'
26490 5' -57.4 NC_005357.1 + 32463 0.69 0.361244
Target:  5'- -cCCUACUGCcgAgGUGGggGCGGCCg -3'
miRNA:   3'- guGGAUGGCGa-UgCACCagUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 38388 0.69 0.361244
Target:  5'- gGCCUGCCGCU-CGc---CGCGGCCg -3'
miRNA:   3'- gUGGAUGGCGAuGCaccaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 4040 0.69 0.378615
Target:  5'- aGCCgGCCGCggcgaGCGgcaGGcCAgCGGCCCa -3'
miRNA:   3'- gUGGaUGGCGa----UGCa--CCaGU-GCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.