miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26491 5' -61.6 NC_005357.1 + 16820 0.68 0.220317
Target:  5'- -cGACcGCGCCGCCgugguugccacugccUGGGCcGCaGACCGc -3'
miRNA:   3'- acUUGaCGCGGCGG---------------ACCCG-CG-CUGGU- -5'
26491 5' -61.6 NC_005357.1 + 17350 0.68 0.22377
Target:  5'- cGGGC-GCGCUGCgCUGGGUgGCGAUg- -3'
miRNA:   3'- aCUUGaCGCGGCG-GACCCG-CGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 14730 0.68 0.229626
Target:  5'- cGAGC--CGCUGCC-GGcGCGCGGCCu -3'
miRNA:   3'- aCUUGacGCGGCGGaCC-CGCGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 33877 0.68 0.229626
Target:  5'- --cGCUGC-CCGCCaucGGCGCGGCUg -3'
miRNA:   3'- acuUGACGcGGCGGac-CCGCGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 33785 0.68 0.229626
Target:  5'- cGAguACgGCGCgGCCUGGG-GCGuuuCCGa -3'
miRNA:   3'- aCU--UGaCGCGgCGGACCCgCGCu--GGU- -5'
26491 5' -61.6 NC_005357.1 + 23498 0.68 0.235611
Target:  5'- cGAACUGaCGaaaaaCGCCagcgcGGGCGcCGACCu -3'
miRNA:   3'- aCUUGAC-GCg----GCGGa----CCCGC-GCUGGu -5'
26491 5' -61.6 NC_005357.1 + 15705 0.68 0.235611
Target:  5'- aGAAg-GCGuCCGCCUGGGCaucgaacuggcGCGagGCCAu -3'
miRNA:   3'- aCUUgaCGC-GGCGGACCCG-----------CGC--UGGU- -5'
26491 5' -61.6 NC_005357.1 + 10059 0.68 0.241109
Target:  5'- --uGCUGgGCgGCCgGGGCcucggcgGCGACCGc -3'
miRNA:   3'- acuUGACgCGgCGGaCCCG-------CGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 25757 0.68 0.247973
Target:  5'- cUGGGC-GCGCUG-CUGGGCgGCGGCa- -3'
miRNA:   3'- -ACUUGaCGCGGCgGACCCG-CGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 5028 0.67 0.253709
Target:  5'- cGAcuACUGCGUugauauuCGCCUGGuugGCGACCGc -3'
miRNA:   3'- aCU--UGACGCG-------GCGGACCcg-CGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 21722 0.67 0.254353
Target:  5'- cGAACgcgGUacggauGCCaCCguUGGGCGCGGCCGc -3'
miRNA:   3'- aCUUGa--CG------CGGcGG--ACCCGCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 8730 0.67 0.260867
Target:  5'- aGAugUGC-CCGgC-GGGCGCGGCg- -3'
miRNA:   3'- aCUugACGcGGCgGaCCCGCGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 26833 0.67 0.267517
Target:  5'- -aGGCUGCGCCGCCccgaUGGaGCG-GGCgAa -3'
miRNA:   3'- acUUGACGCGGCGG----ACC-CGCgCUGgU- -5'
26491 5' -61.6 NC_005357.1 + 16450 0.67 0.267517
Target:  5'- uUGAACacgGCGUCGUagaucggGGGCGUGACgGa -3'
miRNA:   3'- -ACUUGa--CGCGGCGga-----CCCGCGCUGgU- -5'
26491 5' -61.6 NC_005357.1 + 29657 0.67 0.267517
Target:  5'- aUGAGgUaGcCGuuGCCcagcaGGGCGCGGCCGu -3'
miRNA:   3'- -ACUUgA-C-GCggCGGa----CCCGCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 17757 0.67 0.267517
Target:  5'- gUGGACgugGC-CCGCggcGGGCGCGACa- -3'
miRNA:   3'- -ACUUGa--CGcGGCGga-CCCGCGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 13540 0.67 0.274303
Target:  5'- cGAACUGUcgGCCGCCUGacucGGUGC--CCAc -3'
miRNA:   3'- aCUUGACG--CGGCGGAC----CCGCGcuGGU- -5'
26491 5' -61.6 NC_005357.1 + 15161 0.67 0.279134
Target:  5'- cGAACUGCgguucauugccucgGCCaagaGCCUgGGGCGcCGGCUg -3'
miRNA:   3'- aCUUGACG--------------CGG----CGGA-CCCGC-GCUGGu -5'
26491 5' -61.6 NC_005357.1 + 10801 0.67 0.281225
Target:  5'- aUGuACUGCuG-CGCCUcGGCGCGGCUg -3'
miRNA:   3'- -ACuUGACG-CgGCGGAcCCGCGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 12959 0.67 0.283329
Target:  5'- gGAACUGgccgcgcgcucguCGCCuggugccaggagcaCCUGGGCGCGACg- -3'
miRNA:   3'- aCUUGAC-------------GCGGc-------------GGACCCGCGCUGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.