miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26491 5' -61.6 NC_005357.1 + 32907 0.68 0.214664
Target:  5'- aGAACUGCgGCCacgGCCUGcacGGCugcuguucggccaggGCGACCAc -3'
miRNA:   3'- aCUUGACG-CGG---CGGAC---CCG---------------CGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 34023 0.68 0.217475
Target:  5'- cGAACUGCucGCUGCCcgacacgUGGGCgGCGAUUc -3'
miRNA:   3'- aCUUGACG--CGGCGG-------ACCCG-CGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 33785 0.68 0.229626
Target:  5'- cGAguACgGCGCgGCCUGGG-GCGuuuCCGa -3'
miRNA:   3'- aCU--UGaCGCGgCGGACCCgCGCu--GGU- -5'
26491 5' -61.6 NC_005357.1 + 33877 0.68 0.229626
Target:  5'- --cGCUGC-CCGCCaucGGCGCGGCUg -3'
miRNA:   3'- acuUGACGcGGCGGac-CCGCGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 15705 0.68 0.235611
Target:  5'- aGAAg-GCGuCCGCCUGGGCaucgaacuggcGCGagGCCAu -3'
miRNA:   3'- aCUUgaCGC-GGCGGACCCG-----------CGC--UGGU- -5'
26491 5' -61.6 NC_005357.1 + 25757 0.68 0.247973
Target:  5'- cUGGGC-GCGCUG-CUGGGCgGCGGCa- -3'
miRNA:   3'- -ACUUGaCGCGGCgGACCCG-CGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 5028 0.67 0.253709
Target:  5'- cGAcuACUGCGUugauauuCGCCUGGuugGCGACCGc -3'
miRNA:   3'- aCU--UGACGCG-------GCGGACCcg-CGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 8679 0.71 0.138483
Target:  5'- cGGcuGCUGCGCCGCCcaGGuGUGCG-CCGc -3'
miRNA:   3'- aCU--UGACGCGGCGGa-CC-CGCGCuGGU- -5'
26491 5' -61.6 NC_005357.1 + 33415 0.7 0.156073
Target:  5'- cGAACuggUGCGCCGCCUGcuggaagcgcccccGCGCGGCgAg -3'
miRNA:   3'- aCUUG---ACGCGGCGGACc-------------CGCGCUGgU- -5'
26491 5' -61.6 NC_005357.1 + 19989 0.7 0.176601
Target:  5'- cGAACUGgacgagucCGCCGCCgucaaGGCGUGGCUg -3'
miRNA:   3'- aCUUGAC--------GCGGCGGac---CCGCGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 7025 0.7 0.176601
Target:  5'- aUGGGCguuUGUGCCGCCUGuugcagcaGGCGCauGGCCu -3'
miRNA:   3'- -ACUUG---ACGCGGCGGAC--------CCGCG--CUGGu -5'
26491 5' -61.6 NC_005357.1 + 41118 0.68 0.218041
Target:  5'- cGGcCUGguggcCGUCGcCCUGGGCGCGGCg- -3'
miRNA:   3'- aCUuGAC-----GCGGC-GGACCCGCGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 18901 0.72 0.117425
Target:  5'- cGAccGCgUGCGCCGCCUGgaaGGCGCGcucgcggaacuGCCGc -3'
miRNA:   3'- aCU--UG-ACGCGGCGGAC---CCGCGC-----------UGGU- -5'
26491 5' -61.6 NC_005357.1 + 2736 0.72 0.114219
Target:  5'- uUGAGCgcggcccgGCGCUGCUcGGGCGUgccGACCAc -3'
miRNA:   3'- -ACUUGa-------CGCGGCGGaCCCGCG---CUGGU- -5'
26491 5' -61.6 NC_005357.1 + 14236 0.75 0.077158
Target:  5'- cUGGACaagGCGCCGCaccugCUGGGCGUGGgCAa -3'
miRNA:   3'- -ACUUGa--CGCGGCG-----GACCCGCGCUgGU- -5'
26491 5' -61.6 NC_005357.1 + 14995 0.75 0.070869
Target:  5'- aGGGcCUGCgGCCGCC-GGGCGCGgugcGCCAg -3'
miRNA:   3'- aCUU-GACG-CGGCGGaCCCGCGC----UGGU- -5'
26491 5' -61.6 NC_005357.1 + 29679 0.75 0.065074
Target:  5'- gGAGC-GCGCCaagcGUCUGGGCGCGGCa- -3'
miRNA:   3'- aCUUGaCGCGG----CGGACCCGCGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 33192 0.76 0.058055
Target:  5'- gUGAACUGgaacUGCCGCC-GGGCGCG-CCGc -3'
miRNA:   3'- -ACUUGAC----GCGGCGGaCCCGCGCuGGU- -5'
26491 5' -61.6 NC_005357.1 + 12833 0.8 0.029062
Target:  5'- gGAcaACUGgcaaacCGCgCGCCUGGGCGCGGCCGa -3'
miRNA:   3'- aCU--UGAC------GCG-GCGGACCCGCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 34201 0.66 0.31792
Target:  5'- -aAGCUGCugacgGCCGCCgaccaGCGCGACUAc -3'
miRNA:   3'- acUUGACG-----CGGCGGacc--CGCGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.