miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26491 5' -61.6 NC_005357.1 + 17289 0.66 0.295486
Target:  5'- cGaAGCcgGCGCCGC--GGGCGCGcauCCAu -3'
miRNA:   3'- aC-UUGa-CGCGGCGgaCCCGCGCu--GGU- -5'
26491 5' -61.6 NC_005357.1 + 21722 0.67 0.254353
Target:  5'- cGAACgcgGUacggauGCCaCCguUGGGCGCGGCCGc -3'
miRNA:   3'- aCUUGa--CG------CGGcGG--ACCCGCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 16450 0.67 0.267517
Target:  5'- uUGAACacgGCGUCGUagaucggGGGCGUGACgGa -3'
miRNA:   3'- -ACUUGa--CGCGGCGga-----CCCGCGCUGgU- -5'
26491 5' -61.6 NC_005357.1 + 29657 0.67 0.267517
Target:  5'- aUGAGgUaGcCGuuGCCcagcaGGGCGCGGCCGu -3'
miRNA:   3'- -ACUUgA-C-GCggCGGa----CCCGCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 26833 0.67 0.267517
Target:  5'- -aGGCUGCGCCGCCccgaUGGaGCG-GGCgAa -3'
miRNA:   3'- acUUGACGCGGCGG----ACC-CGCgCUGgU- -5'
26491 5' -61.6 NC_005357.1 + 13540 0.67 0.274303
Target:  5'- cGAACUGUcgGCCGCCUGacucGGUGC--CCAc -3'
miRNA:   3'- aCUUGACG--CGGCGGAC----CCGCGcuGGU- -5'
26491 5' -61.6 NC_005357.1 + 10801 0.67 0.281225
Target:  5'- aUGuACUGCuG-CGCCUcGGCGCGGCUg -3'
miRNA:   3'- -ACuUGACG-CgGCGGAcCCGCGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 37430 0.67 0.284033
Target:  5'- cGGACUGCGCCGaCCUGcuguuCGCcaacgucauggaacuGACCAg -3'
miRNA:   3'- aCUUGACGCGGC-GGACcc---GCG---------------CUGGU- -5'
26491 5' -61.6 NC_005357.1 + 37973 0.66 0.295486
Target:  5'- gGAACUGgaagaagcCGCaCGCCUGGcGguguUGCGGCCGg -3'
miRNA:   3'- aCUUGAC--------GCG-GCGGACC-C----GCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 5028 0.67 0.253709
Target:  5'- cGAcuACUGCGUugauauuCGCCUGGuugGCGACCGc -3'
miRNA:   3'- aCU--UGACGCG-------GCGGACCcg-CGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 25757 0.68 0.247973
Target:  5'- cUGGGC-GCGCUG-CUGGGCgGCGGCa- -3'
miRNA:   3'- -ACUUGaCGCGGCgGACCCG-CGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 15705 0.68 0.235611
Target:  5'- aGAAg-GCGuCCGCCUGGGCaucgaacuggcGCGagGCCAu -3'
miRNA:   3'- aCUUgaCGC-GGCGGACCCG-----------CGC--UGGU- -5'
26491 5' -61.6 NC_005357.1 + 38717 0.71 0.150267
Target:  5'- aUGAGCggaUGCGCCGCaugGGGCaGCGcgucGCCGu -3'
miRNA:   3'- -ACUUG---ACGCGGCGga-CCCG-CGC----UGGU- -5'
26491 5' -61.6 NC_005357.1 + 28812 0.7 0.167395
Target:  5'- uUGAGCagccagcGCGCCGUCgucGGGuUGCGGCCGg -3'
miRNA:   3'- -ACUUGa------CGCGGCGGa--CCC-GCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 21171 0.69 0.18137
Target:  5'- -cAACaGCGCgGCCUGcuGCGCGGCCu -3'
miRNA:   3'- acUUGaCGCGgCGGACc-CGCGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 16142 0.69 0.194307
Target:  5'- aGGACUGCgGCCGCacgcugaugguggUGGGCGUuACCGc -3'
miRNA:   3'- aCUUGACG-CGGCGg------------ACCCGCGcUGGU- -5'
26491 5' -61.6 NC_005357.1 + 32907 0.68 0.214664
Target:  5'- aGAACUGCgGCCacgGCCUGcacGGCugcuguucggccaggGCGACCAc -3'
miRNA:   3'- aCUUGACG-CGG---CGGAC---CCG---------------CGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 34023 0.68 0.217475
Target:  5'- cGAACUGCucGCUGCCcgacacgUGGGCgGCGAUUc -3'
miRNA:   3'- aCUUGACG--CGGCGG-------ACCCG-CGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 33785 0.68 0.229626
Target:  5'- cGAguACgGCGCgGCCUGGG-GCGuuuCCGa -3'
miRNA:   3'- aCU--UGaCGCGgCGGACCCgCGCu--GGU- -5'
26491 5' -61.6 NC_005357.1 + 33877 0.68 0.229626
Target:  5'- --cGCUGC-CCGCCaucGGCGCGGCUg -3'
miRNA:   3'- acuUGACGcGGCGGac-CCGCGCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.