miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26491 5' -61.6 NC_005357.1 + 1916 0.66 0.325677
Target:  5'- aGGACuUGCGCagcaGCUugUGGGUG-GGCCAu -3'
miRNA:   3'- aCUUG-ACGCGg---CGG--ACCCGCgCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 2736 0.72 0.114219
Target:  5'- uUGAGCgcggcccgGCGCUGCUcGGGCGUgccGACCAc -3'
miRNA:   3'- -ACUUGa-------CGCGGCGGaCCCGCG---CUGGU- -5'
26491 5' -61.6 NC_005357.1 + 5028 0.67 0.253709
Target:  5'- cGAcuACUGCGUugauauuCGCCUGGuugGCGACCGc -3'
miRNA:   3'- aCU--UGACGCG-------GCGGACCcg-CGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 7025 0.7 0.176601
Target:  5'- aUGGGCguuUGUGCCGCCUGuugcagcaGGCGCauGGCCu -3'
miRNA:   3'- -ACUUG---ACGCGGCGGAC--------CCGCG--CUGGu -5'
26491 5' -61.6 NC_005357.1 + 8679 0.71 0.138483
Target:  5'- cGGcuGCUGCGCCGCCcaGGuGUGCG-CCGc -3'
miRNA:   3'- aCU--UGACGCGGCGGa-CC-CGCGCuGGU- -5'
26491 5' -61.6 NC_005357.1 + 8730 0.67 0.260867
Target:  5'- aGAugUGC-CCGgC-GGGCGCGGCg- -3'
miRNA:   3'- aCUugACGcGGCgGaCCCGCGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 10059 0.68 0.241109
Target:  5'- --uGCUGgGCgGCCgGGGCcucggcgGCGACCGc -3'
miRNA:   3'- acuUGACgCGgCGGaCCCG-------CGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 10801 0.67 0.281225
Target:  5'- aUGuACUGCuG-CGCCUcGGCGCGGCUg -3'
miRNA:   3'- -ACuUGACG-CgGCGGAcCCGCGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 11267 0.66 0.310302
Target:  5'- uUGcGCUGCGgCG-CUGGGaCGCucGGCCAg -3'
miRNA:   3'- -ACuUGACGCgGCgGACCC-GCG--CUGGU- -5'
26491 5' -61.6 NC_005357.1 + 12833 0.8 0.029062
Target:  5'- gGAcaACUGgcaaacCGCgCGCCUGGGCGCGGCCGa -3'
miRNA:   3'- aCU--UGAC------GCG-GCGGACCCGCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 12959 0.67 0.283329
Target:  5'- gGAACUGgccgcgcgcucguCGCCuggugccaggagcaCCUGGGCGCGACg- -3'
miRNA:   3'- aCUUGAC-------------GCGGc-------------GGACCCGCGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 13148 0.66 0.308044
Target:  5'- cUGcAACUGCGCCucgaugucgGCCagugucggccgcgcUGGGCGCccuuGGCCGg -3'
miRNA:   3'- -AC-UUGACGCGG---------CGG--------------ACCCGCG----CUGGU- -5'
26491 5' -61.6 NC_005357.1 + 13540 0.67 0.274303
Target:  5'- cGAACUGUcgGCCGCCUGacucGGUGC--CCAc -3'
miRNA:   3'- aCUUGACG--CGGCGGAC----CCGCGcuGGU- -5'
26491 5' -61.6 NC_005357.1 + 14236 0.75 0.077158
Target:  5'- cUGGACaagGCGCCGCaccugCUGGGCGUGGgCAa -3'
miRNA:   3'- -ACUUGa--CGCGGCG-----GACCCGCGCUgGU- -5'
26491 5' -61.6 NC_005357.1 + 14296 0.66 0.31792
Target:  5'- -aAGCUGCuGCCGCCcgaccaGGcguaccGCGUGACCAc -3'
miRNA:   3'- acUUGACG-CGGCGGa-----CC------CGCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 14730 0.68 0.229626
Target:  5'- cGAGC--CGCUGCC-GGcGCGCGGCCu -3'
miRNA:   3'- aCUUGacGCGGCGGaCC-CGCGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 14995 0.75 0.070869
Target:  5'- aGGGcCUGCgGCCGCC-GGGCGCGgugcGCCAg -3'
miRNA:   3'- aCUU-GACG-CGGCGGaCCCGCGC----UGGU- -5'
26491 5' -61.6 NC_005357.1 + 15161 0.67 0.279134
Target:  5'- cGAACUGCgguucauugccucgGCCaagaGCCUgGGGCGcCGGCUg -3'
miRNA:   3'- aCUUGACG--------------CGG----CGGA-CCCGC-GCUGGu -5'
26491 5' -61.6 NC_005357.1 + 15705 0.68 0.235611
Target:  5'- aGAAg-GCGuCCGCCUGGGCaucgaacuggcGCGagGCCAu -3'
miRNA:   3'- aCUUgaCGC-GGCGGACCCG-----------CGC--UGGU- -5'
26491 5' -61.6 NC_005357.1 + 15939 0.66 0.325677
Target:  5'- cGAuagGCUGCGgCGCCUucGCGUaGGCCAg -3'
miRNA:   3'- aCU---UGACGCgGCGGAccCGCG-CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.