miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26491 5' -61.6 NC_005357.1 + 41118 0.68 0.218041
Target:  5'- cGGcCUGguggcCGUCGcCCUGGGCGCGGCg- -3'
miRNA:   3'- aCUuGAC-----GCGGC-GGACCCGCGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 39592 0.66 0.302824
Target:  5'- gGuGCUgGCGCCGCUgc-GCGUGGCCGc -3'
miRNA:   3'- aCuUGA-CGCGGCGGaccCGCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 38717 0.71 0.150267
Target:  5'- aUGAGCggaUGCGCCGCaugGGGCaGCGcgucGCCGu -3'
miRNA:   3'- -ACUUG---ACGCGGCGga-CCCG-CGC----UGGU- -5'
26491 5' -61.6 NC_005357.1 + 37973 0.66 0.295486
Target:  5'- gGAACUGgaagaagcCGCaCGCCUGGcGguguUGCGGCCGg -3'
miRNA:   3'- aCUUGAC--------GCG-GCGGACC-C----GCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 37430 0.67 0.284033
Target:  5'- cGGACUGCGCCGaCCUGcuguuCGCcaacgucauggaacuGACCAg -3'
miRNA:   3'- aCUUGACGCGGC-GGACcc---GCG---------------CUGGU- -5'
26491 5' -61.6 NC_005357.1 + 34201 0.66 0.31792
Target:  5'- -aAGCUGCugacgGCCGCCgaccaGCGCGACUAc -3'
miRNA:   3'- acUUGACG-----CGGCGGacc--CGCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 34023 0.68 0.217475
Target:  5'- cGAACUGCucGCUGCCcgacacgUGGGCgGCGAUUc -3'
miRNA:   3'- aCUUGACG--CGGCGG-------ACCCG-CGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 33877 0.68 0.229626
Target:  5'- --cGCUGC-CCGCCaucGGCGCGGCUg -3'
miRNA:   3'- acuUGACGcGGCGGac-CCGCGCUGGu -5'
26491 5' -61.6 NC_005357.1 + 33785 0.68 0.229626
Target:  5'- cGAguACgGCGCgGCCUGGG-GCGuuuCCGa -3'
miRNA:   3'- aCU--UGaCGCGgCGGACCCgCGCu--GGU- -5'
26491 5' -61.6 NC_005357.1 + 33415 0.7 0.156073
Target:  5'- cGAACuggUGCGCCGCCUGcuggaagcgcccccGCGCGGCgAg -3'
miRNA:   3'- aCUUG---ACGCGGCGGACc-------------CGCGCUGgU- -5'
26491 5' -61.6 NC_005357.1 + 33192 0.76 0.058055
Target:  5'- gUGAACUGgaacUGCCGCC-GGGCGCG-CCGc -3'
miRNA:   3'- -ACUUGAC----GCGGCGGaCCCGCGCuGGU- -5'
26491 5' -61.6 NC_005357.1 + 32907 0.68 0.214664
Target:  5'- aGAACUGCgGCCacgGCCUGcacGGCugcuguucggccaggGCGACCAc -3'
miRNA:   3'- aCUUGACG-CGG---CGGAC---CCG---------------CGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 29679 0.75 0.065074
Target:  5'- gGAGC-GCGCCaagcGUCUGGGCGCGGCa- -3'
miRNA:   3'- aCUUGaCGCGG----CGGACCCGCGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 29657 0.67 0.267517
Target:  5'- aUGAGgUaGcCGuuGCCcagcaGGGCGCGGCCGu -3'
miRNA:   3'- -ACUUgA-C-GCggCGGa----CCCGCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 28812 0.7 0.167395
Target:  5'- uUGAGCagccagcGCGCCGUCgucGGGuUGCGGCCGg -3'
miRNA:   3'- -ACUUGa------CGCGGCGGa--CCC-GCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 27693 0.66 0.310302
Target:  5'- --uGCUGCGCguacUGCCUGGG-GCuACCGg -3'
miRNA:   3'- acuUGACGCG----GCGGACCCgCGcUGGU- -5'
26491 5' -61.6 NC_005357.1 + 26833 0.67 0.267517
Target:  5'- -aGGCUGCGCCGCCccgaUGGaGCG-GGCgAa -3'
miRNA:   3'- acUUGACGCGGCGG----ACC-CGCgCUGgU- -5'
26491 5' -61.6 NC_005357.1 + 25757 0.68 0.247973
Target:  5'- cUGGGC-GCGCUG-CUGGGCgGCGGCa- -3'
miRNA:   3'- -ACUUGaCGCGGCgGACCCG-CGCUGgu -5'
26491 5' -61.6 NC_005357.1 + 25616 1.08 0.000186
Target:  5'- gUGAACUGCGCCGCCUGGGCGCGACCAa -3'
miRNA:   3'- -ACUUGACGCGGCGGACCCGCGCUGGU- -5'
26491 5' -61.6 NC_005357.1 + 23498 0.68 0.235611
Target:  5'- cGAACUGaCGaaaaaCGCCagcgcGGGCGcCGACCu -3'
miRNA:   3'- aCUUGAC-GCg----GCGGa----CCCGC-GCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.