Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26492 | 3' | -59.7 | NC_005357.1 | + | 9300 | 0.67 | 0.339504 |
Target: 5'- aCAAGCCCgaucacggcgacauuCAGGGCCUuggguucauGGgCGAGGAUg -3' miRNA: 3'- aGUUCGGG---------------GUUCCGGG---------CCgGCUCUUG- -5' |
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26492 | 3' | -59.7 | NC_005357.1 | + | 34962 | 0.67 | 0.344435 |
Target: 5'- gUCGAGUCCuggugCAAGGCCauucgcgcgaaGGCCGAagccGAACu -3' miRNA: 3'- -AGUUCGGG-----GUUCCGGg----------CCGGCU----CUUG- -5' |
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26492 | 3' | -59.7 | NC_005357.1 | + | 37816 | 0.66 | 0.378616 |
Target: 5'- gCGGGCCaacauuGGCCUGGCUGAccuGGGCg -3' miRNA: 3'- aGUUCGGgguu--CCGGGCCGGCU---CUUG- -5' |
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26492 | 3' | -59.7 | NC_005357.1 | + | 29670 | 0.66 | 0.393816 |
Target: 5'- ---uGCCCagCAGGGCgCGGCCGuguguuugaaaaucGGAACu -3' miRNA: 3'- aguuCGGG--GUUCCGgGCCGGC--------------UCUUG- -5' |
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26492 | 3' | -59.7 | NC_005357.1 | + | 13056 | 0.66 | 0.404781 |
Target: 5'- cCGAGUCCgAGGGCuggggcaaggccaCCGGCgcgugguuCGAGGACu -3' miRNA: 3'- aGUUCGGGgUUCCG-------------GGCCG--------GCUCUUG- -5' |
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26492 | 3' | -59.7 | NC_005357.1 | + | 39578 | 0.65 | 0.412198 |
Target: 5'- cCAGGCCCCucgcuGGuGCUggcgccgcugcgcgUGGCCGcGAGCa -3' miRNA: 3'- aGUUCGGGGu----UC-CGG--------------GCCGGCuCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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