Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26493 | 3' | -56.1 | NC_005357.1 | + | 20621 | 0.75 | 0.166636 |
Target: 5'- cGUCGcAGGUCGGUGUCGGCc-UGCGCu -3' miRNA: 3'- -UAGC-UCCGGCCAUAGCUGuuGCGCGu -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 5223 | 0.65 | 0.606638 |
Target: 5'- cGUCGAGGauguuggacgccaCGGUGUUGACGuugGCGUugGCAc -3' miRNA: 3'- -UAGCUCCg------------GCCAUAGCUGU---UGCG--CGU- -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 17145 | 0.66 | 0.598818 |
Target: 5'- -gCGAGGCCgcuuuGGUacuucacGUCGuCGAUGCGCc -3' miRNA: 3'- uaGCUCCGG-----CCA-------UAGCuGUUGCGCGu -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 30503 | 0.66 | 0.577673 |
Target: 5'- cGUCGAGGuuGagcaCGAgGugGCGCAg -3' miRNA: 3'- -UAGCUCCggCcauaGCUgUugCGCGU- -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 1468 | 0.66 | 0.577673 |
Target: 5'- gGUCGgcggccuccuggcAGGCCGGgguaucgcagugcugGUCgGACAugGCGCc -3' miRNA: 3'- -UAGC-------------UCCGGCCa--------------UAG-CUGUugCGCGu -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 24961 | 0.66 | 0.577673 |
Target: 5'- -gCGGGGUCGaaGUCGuacuCGACGCGCc -3' miRNA: 3'- uaGCUCCGGCcaUAGCu---GUUGCGCGu -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 18790 | 0.66 | 0.577673 |
Target: 5'- cGUCGAGGCCgccaccuuguuGGUgAUCuGGCGGCGCa-- -3' miRNA: 3'- -UAGCUCCGG-----------CCA-UAG-CUGUUGCGcgu -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 29267 | 0.66 | 0.566608 |
Target: 5'- ----cGGCCGGUGUCGGgGugGaCGUg -3' miRNA: 3'- uagcuCCGGCCAUAGCUgUugC-GCGu -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 9163 | 0.67 | 0.512264 |
Target: 5'- cUUGAgGGCCGGcagCGACAACuugGCGCc -3' miRNA: 3'- uAGCU-CCGGCCauaGCUGUUG---CGCGu -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 24572 | 0.67 | 0.512264 |
Target: 5'- -gCGAGGCCGGccacgGUCGGgccgucCGGCGUGUc -3' miRNA: 3'- uaGCUCCGGCCa----UAGCU------GUUGCGCGu -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 13160 | 0.67 | 0.49112 |
Target: 5'- cUCGAugucGGCCaGUGUCGGC--CGCGCu -3' miRNA: 3'- uAGCU----CCGGcCAUAGCUGuuGCGCGu -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 23270 | 0.7 | 0.356601 |
Target: 5'- gGUC-AGGUCGGUGUCGGCGuGCGC-CAc -3' miRNA: 3'- -UAGcUCCGGCCAUAGCUGU-UGCGcGU- -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 23721 | 0.7 | 0.365318 |
Target: 5'- gGUCGcGGGCCaGUGccUCGGUGGCGCGCAg -3' miRNA: 3'- -UAGC-UCCGGcCAU--AGCUGUUGCGCGU- -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 28337 | 0.68 | 0.430327 |
Target: 5'- cUCGAuGGCCuuGGccucGUCgGGCAGCGCGCGg -3' miRNA: 3'- uAGCU-CCGG--CCa---UAG-CUGUUGCGCGU- -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 8124 | 0.68 | 0.430327 |
Target: 5'- -gCGcGGCCGGcguugGUUGugGGCGUGCGg -3' miRNA: 3'- uaGCuCCGGCCa----UAGCugUUGCGCGU- -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 17704 | 0.68 | 0.440156 |
Target: 5'- cUCG-GGCCGGgaaaugcccaUcgCGGCAagcuGCGCGCAu -3' miRNA: 3'- uAGCuCCGGCC----------AuaGCUGU----UGCGCGU- -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 41875 | 0.68 | 0.440156 |
Target: 5'- gGUCGAGGCgUGGUuuuucagCGGCc-CGCGCAc -3' miRNA: 3'- -UAGCUCCG-GCCAua-----GCUGuuGCGCGU- -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 5553 | 0.68 | 0.470389 |
Target: 5'- gGUCGcccGCCacGGUAUCGACGGCGC-CAa -3' miRNA: 3'- -UAGCuc-CGG--CCAUAGCUGUUGCGcGU- -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 37138 | 0.66 | 0.588785 |
Target: 5'- uAUCGAcGCCGuGgc-CGACAACGcCGCGa -3' miRNA: 3'- -UAGCUcCGGC-CauaGCUGUUGC-GCGU- -5' |
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26493 | 3' | -56.1 | NC_005357.1 | + | 5451 | 0.78 | 0.105921 |
Target: 5'- -gCGAGGUCGGUAUCGACcaucACGcCGCGg -3' miRNA: 3'- uaGCUCCGGCCAUAGCUGu---UGC-GCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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