miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26493 3' -56.1 NC_005357.1 + 1468 0.66 0.577673
Target:  5'- gGUCGgcggccuccuggcAGGCCGGgguaucgcagugcugGUCgGACAugGCGCc -3'
miRNA:   3'- -UAGC-------------UCCGGCCa--------------UAG-CUGUugCGCGu -5'
26493 3' -56.1 NC_005357.1 + 2818 0.72 0.256793
Target:  5'- cGUCG-GGCCaGGUGcucgCGGCcACGCGCAg -3'
miRNA:   3'- -UAGCuCCGG-CCAUa---GCUGuUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 4557 0.68 0.430327
Target:  5'- cUUGAGGCCGaaGUCGcCGAgGCGCu -3'
miRNA:   3'- uAGCUCCGGCcaUAGCuGUUgCGCGu -5'
26493 3' -56.1 NC_005357.1 + 5223 0.65 0.606638
Target:  5'- cGUCGAGGauguuggacgccaCGGUGUUGACGuugGCGUugGCAc -3'
miRNA:   3'- -UAGCUCCg------------GCCAUAGCUGU---UGCG--CGU- -5'
26493 3' -56.1 NC_005357.1 + 5249 0.7 0.331336
Target:  5'- uUCGgccggcAGGUCGGgGUCGGCAAUGCGUc -3'
miRNA:   3'- uAGC------UCCGGCCaUAGCUGUUGCGCGu -5'
26493 3' -56.1 NC_005357.1 + 5311 0.71 0.307413
Target:  5'- gGUCGAGGCC-GUAggccgCGAgcaCGugGCGCAg -3'
miRNA:   3'- -UAGCUCCGGcCAUa----GCU---GUugCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 5451 0.78 0.105921
Target:  5'- -gCGAGGUCGGUAUCGACcaucACGcCGCGg -3'
miRNA:   3'- uaGCUCCGGCCAUAGCUGu---UGC-GCGU- -5'
26493 3' -56.1 NC_005357.1 + 5553 0.68 0.470389
Target:  5'- gGUCGcccGCCacGGUAUCGACGGCGC-CAa -3'
miRNA:   3'- -UAGCuc-CGG--CCAUAGCUGUUGCGcGU- -5'
26493 3' -56.1 NC_005357.1 + 5575 0.69 0.414871
Target:  5'- uGUCGAGGCCGGcauacuccacgaauuUGgcccacUCGGCGGgGUGCGu -3'
miRNA:   3'- -UAGCUCCGGCC---------------AU------AGCUGUUgCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 6177 0.68 0.469364
Target:  5'- -gCGcAGGCCGGUcuugccgcagcGUuugcaggUGACGGCGCGCGg -3'
miRNA:   3'- uaGC-UCCGGCCA-----------UA-------GCUGUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 7826 0.67 0.49112
Target:  5'- gGUCGAGGCgCGGcugcaCGAUGACcagGCGCAc -3'
miRNA:   3'- -UAGCUCCG-GCCaua--GCUGUUG---CGCGU- -5'
26493 3' -56.1 NC_005357.1 + 8124 0.68 0.430327
Target:  5'- -gCGcGGCCGGcguugGUUGugGGCGUGCGg -3'
miRNA:   3'- uaGCuCCGGCCa----UAGCugUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 9163 0.67 0.512264
Target:  5'- cUUGAgGGCCGGcagCGACAACuugGCGCc -3'
miRNA:   3'- uAGCU-CCGGCCauaGCUGUUG---CGCGu -5'
26493 3' -56.1 NC_005357.1 + 9607 0.7 0.339609
Target:  5'- cGUUGcGGCUGGUGUaguccgacCGGCAgACGCGCAg -3'
miRNA:   3'- -UAGCuCCGGCCAUA--------GCUGU-UGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 10314 0.67 0.501643
Target:  5'- cGUCGAGGUCGGcagCGGcCAGgGCGUu -3'
miRNA:   3'- -UAGCUCCGGCCauaGCU-GUUgCGCGu -5'
26493 3' -56.1 NC_005357.1 + 13160 0.67 0.49112
Target:  5'- cUCGAugucGGCCaGUGUCGGC--CGCGCu -3'
miRNA:   3'- uAGCU----CCGGcCAUAGCUGuuGCGCGu -5'
26493 3' -56.1 NC_005357.1 + 13770 0.67 0.501643
Target:  5'- -gCGAGGCCGccggcaccgAUCuGGCAcuGCGCGCGg -3'
miRNA:   3'- uaGCUCCGGCca-------UAG-CUGU--UGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 14597 0.66 0.577673
Target:  5'- -gCGcGGCCGGcgccaccgCgGGCAGCGCGCGc -3'
miRNA:   3'- uaGCuCCGGCCaua-----G-CUGUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 14939 0.69 0.410111
Target:  5'- -cCGAGGCCGccggcauccucgcGUGgugcgUGGCGGCGCGCu -3'
miRNA:   3'- uaGCUCCGGC-------------CAUa----GCUGUUGCGCGu -5'
26493 3' -56.1 NC_005357.1 + 15085 0.66 0.5545
Target:  5'- -gCGAGGUCGGcc-CGgccuacguggaaaGCAACGCGCGc -3'
miRNA:   3'- uaGCUCCGGCCauaGC-------------UGUUGCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.