miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26493 3' -56.1 NC_005357.1 + 16181 0.71 0.299738
Target:  5'- -gCGGGuGCCcGUGccuUCGGCGACGCGCGc -3'
miRNA:   3'- uaGCUC-CGGcCAU---AGCUGUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 16730 0.67 0.522977
Target:  5'- -gCGGGGCUGGUAUgaGCAGCGuUGCc -3'
miRNA:   3'- uaGCUCCGGCCAUAgcUGUUGC-GCGu -5'
26493 3' -56.1 NC_005357.1 + 17145 0.66 0.598818
Target:  5'- -gCGAGGCCgcuuuGGUacuucacGUCGuCGAUGCGCc -3'
miRNA:   3'- uaGCUCCGG-----CCA-------UAGCuGUUGCGCGu -5'
26493 3' -56.1 NC_005357.1 + 17704 0.68 0.440156
Target:  5'- cUCG-GGCCGGgaaaugcccaUcgCGGCAagcuGCGCGCAu -3'
miRNA:   3'- uAGCuCCGGCC----------AuaGCUGU----UGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 18672 0.66 0.555598
Target:  5'- cAUCG-GcCCGGUGgcgcCGGCAugGCGCu -3'
miRNA:   3'- -UAGCuCcGGCCAUa---GCUGUugCGCGu -5'
26493 3' -56.1 NC_005357.1 + 18790 0.66 0.577673
Target:  5'- cGUCGAGGCCgccaccuuguuGGUgAUCuGGCGGCGCa-- -3'
miRNA:   3'- -UAGCUCCGG-----------CCA-UAG-CUGUUGCGcgu -5'
26493 3' -56.1 NC_005357.1 + 18891 0.68 0.440156
Target:  5'- -cCGAGGCC---AUCGACcGCGUGCGc -3'
miRNA:   3'- uaGCUCCGGccaUAGCUGuUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 19594 0.67 0.501643
Target:  5'- -gCGcuGUCGGcUGUCGGCAGCGCgGCGa -3'
miRNA:   3'- uaGCucCGGCC-AUAGCUGUUGCG-CGU- -5'
26493 3' -56.1 NC_005357.1 + 20621 0.75 0.166636
Target:  5'- cGUCGcAGGUCGGUGUCGGCc-UGCGCu -3'
miRNA:   3'- -UAGC-UCCGGCCAUAGCUGuuGCGCGu -5'
26493 3' -56.1 NC_005357.1 + 23270 0.7 0.356601
Target:  5'- gGUC-AGGUCGGUGUCGGCGuGCGC-CAc -3'
miRNA:   3'- -UAGcUCCGGCCAUAGCUGU-UGCGcGU- -5'
26493 3' -56.1 NC_005357.1 + 23721 0.7 0.365318
Target:  5'- gGUCGcGGGCCaGUGccUCGGUGGCGCGCAg -3'
miRNA:   3'- -UAGC-UCCGGcCAU--AGCUGUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 24572 0.67 0.512264
Target:  5'- -gCGAGGCCGGccacgGUCGGgccgucCGGCGUGUc -3'
miRNA:   3'- uaGCUCCGGCCa----UAGCU------GUUGCGCGu -5'
26493 3' -56.1 NC_005357.1 + 24821 1.07 0.000829
Target:  5'- cAUCGAGGCCGGUAUCGACAACGCGCAg -3'
miRNA:   3'- -UAGCUCCGGCCAUAGCUGUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 24961 0.66 0.577673
Target:  5'- -gCGGGGUCGaaGUCGuacuCGACGCGCc -3'
miRNA:   3'- uaGCUCCGGCcaUAGCu---GUUGCGCGu -5'
26493 3' -56.1 NC_005357.1 + 28337 0.68 0.430327
Target:  5'- cUCGAuGGCCuuGGccucGUCgGGCAGCGCGCGg -3'
miRNA:   3'- uAGCU-CCGG--CCa---UAG-CUGUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 29267 0.66 0.566608
Target:  5'- ----cGGCCGGUGUCGGgGugGaCGUg -3'
miRNA:   3'- uagcuCCGGCCAUAGCUgUugC-GCGu -5'
26493 3' -56.1 NC_005357.1 + 30503 0.66 0.577673
Target:  5'- cGUCGAGGuuGagcaCGAgGugGCGCAg -3'
miRNA:   3'- -UAGCUCCggCcauaGCUgUugCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 34146 0.66 0.555598
Target:  5'- -cCGcGGCCug-GUCGAUAGCGUGCGu -3'
miRNA:   3'- uaGCuCCGGccaUAGCUGUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 37138 0.66 0.588785
Target:  5'- uAUCGAcGCCGuGgc-CGACAACGcCGCGa -3'
miRNA:   3'- -UAGCUcCGGC-CauaGCUGUUGC-GCGU- -5'
26493 3' -56.1 NC_005357.1 + 37223 0.74 0.201972
Target:  5'- cUCGAcgugGGCaCGGUAgccggcaauaUCGACGACGUGCAg -3'
miRNA:   3'- uAGCU----CCG-GCCAU----------AGCUGUUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.