miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26493 3' -56.1 NC_005357.1 + 5553 0.68 0.470389
Target:  5'- gGUCGcccGCCacGGUAUCGACGGCGC-CAa -3'
miRNA:   3'- -UAGCuc-CGG--CCAUAGCUGUUGCGcGU- -5'
26493 3' -56.1 NC_005357.1 + 6177 0.68 0.469364
Target:  5'- -gCGcAGGCCGGUcuugccgcagcGUuugcaggUGACGGCGCGCGg -3'
miRNA:   3'- uaGC-UCCGGCCA-----------UA-------GCUGUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 18891 0.68 0.440156
Target:  5'- -cCGAGGCC---AUCGACcGCGUGCGc -3'
miRNA:   3'- uaGCUCCGGccaUAGCUGuUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 41875 0.68 0.440156
Target:  5'- gGUCGAGGCgUGGUuuuucagCGGCc-CGCGCAc -3'
miRNA:   3'- -UAGCUCCG-GCCAua-----GCUGuuGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 17704 0.68 0.440156
Target:  5'- cUCG-GGCCGGgaaaugcccaUcgCGGCAagcuGCGCGCAu -3'
miRNA:   3'- uAGCuCCGGCC----------AuaGCUGU----UGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 4557 0.68 0.430327
Target:  5'- cUUGAGGCCGaaGUCGcCGAgGCGCu -3'
miRNA:   3'- uAGCUCCGGCcaUAGCuGUUgCGCGu -5'
26493 3' -56.1 NC_005357.1 + 28337 0.68 0.430327
Target:  5'- cUCGAuGGCCuuGGccucGUCgGGCAGCGCGCGg -3'
miRNA:   3'- uAGCU-CCGG--CCa---UAG-CUGUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 8124 0.68 0.430327
Target:  5'- -gCGcGGCCGGcguugGUUGugGGCGUGCGg -3'
miRNA:   3'- uaGCuCCGGCCa----UAGCugUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 5575 0.69 0.414871
Target:  5'- uGUCGAGGCCGGcauacuccacgaauuUGgcccacUCGGCGGgGUGCGu -3'
miRNA:   3'- -UAGCUCCGGCC---------------AU------AGCUGUUgCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 14939 0.69 0.410111
Target:  5'- -cCGAGGCCGccggcauccucgcGUGgugcgUGGCGGCGCGCu -3'
miRNA:   3'- uaGCUCCGGC-------------CAUa----GCUGUUGCGCGu -5'
26493 3' -56.1 NC_005357.1 + 23721 0.7 0.365318
Target:  5'- gGUCGcGGGCCaGUGccUCGGUGGCGCGCAg -3'
miRNA:   3'- -UAGC-UCCGGcCAU--AGCUGUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 23270 0.7 0.356601
Target:  5'- gGUC-AGGUCGGUGUCGGCGuGCGC-CAc -3'
miRNA:   3'- -UAGcUCCGGCCAUAGCUGU-UGCGcGU- -5'
26493 3' -56.1 NC_005357.1 + 9607 0.7 0.339609
Target:  5'- cGUUGcGGCUGGUGUaguccgacCGGCAgACGCGCAg -3'
miRNA:   3'- -UAGCuCCGGCCAUA--------GCUGU-UGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 5249 0.7 0.331336
Target:  5'- uUCGgccggcAGGUCGGgGUCGGCAAUGCGUc -3'
miRNA:   3'- uAGC------UCCGGCCaUAGCUGUUGCGCGu -5'
26493 3' -56.1 NC_005357.1 + 5311 0.71 0.307413
Target:  5'- gGUCGAGGCC-GUAggccgCGAgcaCGugGCGCAg -3'
miRNA:   3'- -UAGCUCCGGcCAUa----GCU---GUugCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 16181 0.71 0.299738
Target:  5'- -gCGGGuGCCcGUGccuUCGGCGACGCGCGc -3'
miRNA:   3'- uaGCUC-CGGcCAU---AGCUGUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 2818 0.72 0.256793
Target:  5'- cGUCG-GGCCaGGUGcucgCGGCcACGCGCAg -3'
miRNA:   3'- -UAGCuCCGG-CCAUa---GCUGuUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 37223 0.74 0.201972
Target:  5'- cUCGAcgugGGCaCGGUAgccggcaauaUCGACGACGUGCAg -3'
miRNA:   3'- uAGCU----CCG-GCCAU----------AGCUGUUGCGCGU- -5'
26493 3' -56.1 NC_005357.1 + 20621 0.75 0.166636
Target:  5'- cGUCGcAGGUCGGUGUCGGCc-UGCGCu -3'
miRNA:   3'- -UAGC-UCCGGCCAUAGCUGuuGCGCGu -5'
26493 3' -56.1 NC_005357.1 + 5451 0.78 0.105921
Target:  5'- -gCGAGGUCGGUAUCGACcaucACGcCGCGg -3'
miRNA:   3'- uaGCUCCGGCCAUAGCUGu---UGC-GCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.