Results 41 - 60 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26493 | 5' | -52.6 | NC_005357.1 | + | 8663 | 0.66 | 0.790885 |
Target: 5'- --cGCGcgGUCGGCAuuGCguGCCGcGCGCa -3' miRNA: 3'- cgaCGCuuUAGCUGU--UG--UGGC-CGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 8667 | 0.69 | 0.60431 |
Target: 5'- cGCUGUGugcagCGGCugcuGCGCCGcccagguguGCGCCg -3' miRNA: 3'- -CGACGCuuua-GCUGu---UGUGGC---------CGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 8767 | 0.66 | 0.820273 |
Target: 5'- -gUGCcgcuUCgGGCAGCACgCGGCGCa -3' miRNA: 3'- cgACGcuuuAG-CUGUUGUG-GCCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 9293 | 0.7 | 0.559429 |
Target: 5'- gGCUGCGcauuGAcuuccUCGGCGAC-CUGGCGgCg -3' miRNA: 3'- -CGACGCu---UU-----AGCUGUUGuGGCCGCgG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 9364 | 0.66 | 0.820273 |
Target: 5'- cGCUGCGcgacccgauGAAgcgcaCGACAGCACgCGGgaacuugcacuUGCCg -3' miRNA: 3'- -CGACGC---------UUUa----GCUGUUGUG-GCC-----------GCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 9559 | 0.72 | 0.483535 |
Target: 5'- --aGuCGGGcgCGACAAUcUCGGCGCCg -3' miRNA: 3'- cgaC-GCUUuaGCUGUUGuGGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 9738 | 0.68 | 0.690124 |
Target: 5'- cGCgGCGAGcacGUCGGCGAacugcucgggcuuCACgucgggcagcuucgCGGCGCCg -3' miRNA: 3'- -CGaCGCUU---UAGCUGUU-------------GUG--------------GCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 9839 | 0.75 | 0.307942 |
Target: 5'- cGCUGCaccucGGuuUCGGCGucgaugagcgugGCACCGGCGCg -3' miRNA: 3'- -CGACG-----CUuuAGCUGU------------UGUGGCCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 9876 | 0.67 | 0.738565 |
Target: 5'- --cGuCGGAG-CGGCAuCGCCGGCGgCa -3' miRNA: 3'- cgaC-GCUUUaGCUGUuGUGGCCGCgG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 9991 | 0.74 | 0.34054 |
Target: 5'- aGCgugGCGggGUCGAaagUGCCGcGCGCCc -3' miRNA: 3'- -CGa--CGCuuUAGCUguuGUGGC-CGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 10130 | 0.66 | 0.810672 |
Target: 5'- gGCgGCGAugaGGUCGcGCAacGCGCUGGUGUUu -3' miRNA: 3'- -CGaCGCU---UUAGC-UGU--UGUGGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 10286 | 0.67 | 0.749306 |
Target: 5'- cCUGU-AGGUCGucCAGCACCucggGGUGCCa -3' miRNA: 3'- cGACGcUUUAGCu-GUUGUGG----CCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 10312 | 0.69 | 0.660893 |
Target: 5'- gGC-GuCGAGGUCGGCAGCGgCCagGGCGUUg -3' miRNA: 3'- -CGaC-GCUUUAGCUGUUGU-GG--CCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 10427 | 0.67 | 0.738565 |
Target: 5'- aGCgUGuCGAGGguuUCGcACAggACGCUGGCGUCg -3' miRNA: 3'- -CG-AC-GCUUU---AGC-UGU--UGUGGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 10472 | 0.78 | 0.218595 |
Target: 5'- cCUG-GAAGUCGcGCAGCACCGGC-CCg -3' miRNA: 3'- cGACgCUUUAGC-UGUUGUGGCCGcGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 10684 | 0.66 | 0.790885 |
Target: 5'- aGUUGCGucuuGA-CGGCAGCGCgcaCGGCcucgGCCg -3' miRNA: 3'- -CGACGCu---UUaGCUGUUGUG---GCCG----CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 10865 | 0.68 | 0.683406 |
Target: 5'- cCUGCGuggcuucGGUCGGCGcgauGCGCgCGGCGUa -3' miRNA: 3'- cGACGCu------UUAGCUGU----UGUG-GCCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 10956 | 0.67 | 0.738565 |
Target: 5'- cGCgGCGAcagcCGGgGACACUGG-GCCa -3' miRNA: 3'- -CGaCGCUuua-GCUgUUGUGGCCgCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 11421 | 0.7 | 0.570579 |
Target: 5'- aGCgGCGAGccggcgugcagGUCGccgauaaggcGCGACACCGGCaGCUu -3' miRNA: 3'- -CGaCGCUU-----------UAGC----------UGUUGUGGCCG-CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 11494 | 0.73 | 0.422637 |
Target: 5'- cCUGCGAcaccgcAAagGGCAGCGCCuGCGCUg -3' miRNA: 3'- cGACGCU------UUagCUGUUGUGGcCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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