Results 21 - 40 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26493 | 5' | -52.6 | NC_005357.1 | + | 4910 | 0.67 | 0.774546 |
Target: 5'- uGUU-CGAcaGGUCGGCGACgACCagcuucuugcccucgGGCGCCa -3' miRNA: 3'- -CGAcGCU--UUAGCUGUUG-UGG---------------CCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 5287 | 0.66 | 0.800872 |
Target: 5'- cGCgGCGuuGUCGGCca---CGGCGUCg -3' miRNA: 3'- -CGaCGCuuUAGCUGuugugGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 5355 | 0.67 | 0.759921 |
Target: 5'- cGCUGCGuggcCGcCuGCACC-GCGCCc -3' miRNA: 3'- -CGACGCuuuaGCuGuUGUGGcCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 5508 | 0.7 | 0.559429 |
Target: 5'- uGCUGCcaAAGUCguagGAC-ACGCCGGcCGCCc -3' miRNA: 3'- -CGACGc-UUUAG----CUGuUGUGGCC-GCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 5560 | 0.67 | 0.770398 |
Target: 5'- cGCcaCGguAUCGACGGCGCCaacgcuGGcCGCCa -3' miRNA: 3'- -CGacGCuuUAGCUGUUGUGG------CC-GCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 6364 | 0.67 | 0.759921 |
Target: 5'- --gGCGAAccggcccacGUCGGCAAUcaggcgcagGCCGGCcgGCCc -3' miRNA: 3'- cgaCGCUU---------UAGCUGUUG---------UGGCCG--CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 6374 | 0.68 | 0.682285 |
Target: 5'- cGCUGgGuuacaccAGGUCGGCcGC-CgCGGCGCCc -3' miRNA: 3'- -CGACgC-------UUUAGCUGuUGuG-GCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 6599 | 0.76 | 0.256744 |
Target: 5'- gGCUGCGGucuuuGUCGAUGACcaGCgGGCGCg -3' miRNA: 3'- -CGACGCUu----UAGCUGUUG--UGgCCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 7137 | 0.74 | 0.365692 |
Target: 5'- --cGCGAAGUCGuCGGCugCGGCcuggaugaccaggGCCg -3' miRNA: 3'- cgaCGCUUUAGCuGUUGugGCCG-------------CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 7207 | 0.72 | 0.483535 |
Target: 5'- aGC-GCGAuguccaCGGCAGCAUCuGCGCCg -3' miRNA: 3'- -CGaCGCUuua---GCUGUUGUGGcCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 7325 | 0.69 | 0.649589 |
Target: 5'- uCUGCGAAcgCaGCAGCcgGuuGGCGUCg -3' miRNA: 3'- cGACGCUUuaGcUGUUG--UggCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 7537 | 0.66 | 0.790885 |
Target: 5'- -gUGCGc--UCGGCGGCGugcucgaucCgCGGCGCCa -3' miRNA: 3'- cgACGCuuuAGCUGUUGU---------G-GCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 7637 | 0.66 | 0.810672 |
Target: 5'- gGC-GCGGc-UCGACccACGCCGGCuccuuGCCg -3' miRNA: 3'- -CGaCGCUuuAGCUGu-UGUGGCCG-----CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 7650 | 0.69 | 0.62694 |
Target: 5'- cUUGCaGAAUCGACAuugcuucuCACCGgGgGCCa -3' miRNA: 3'- cGACGcUUUAGCUGUu-------GUGGC-CgCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 7748 | 0.78 | 0.218595 |
Target: 5'- cCUGCGcAGUCagcgauuGCAGCACCGGCGCg -3' miRNA: 3'- cGACGCuUUAGc------UGUUGUGGCCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 7901 | 0.67 | 0.727711 |
Target: 5'- cGCgUGCGuAGAUCGcCAgcugcucguuGCGCuCGGCGUCc -3' miRNA: 3'- -CG-ACGC-UUUAGCuGU----------UGUG-GCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 7920 | 0.69 | 0.60431 |
Target: 5'- cUUGcCGAGggCGA--ACACCGGCGCg -3' miRNA: 3'- cGAC-GCUUuaGCUguUGUGGCCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 8398 | 0.74 | 0.34054 |
Target: 5'- gGCUGCGuagccAGUCGGcCAGgGCCGuGCGCUu -3' miRNA: 3'- -CGACGCu----UUAGCU-GUUgUGGC-CGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 8428 | 0.67 | 0.738565 |
Target: 5'- --cGCGGGggcGUCGcGgAACAUCGGCGCg -3' miRNA: 3'- cgaCGCUU---UAGC-UgUUGUGGCCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 8633 | 0.69 | 0.649589 |
Target: 5'- cGCUGCGGuggCGAgGuCGCCGGC-CUu -3' miRNA: 3'- -CGACGCUuuaGCUgUuGUGGCCGcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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